miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22044 3' -51.5 NC_004927.1 + 44128 0.66 0.946094
Target:  5'- -aCGAAGAcCUUguucGCACUCGUcuguguUCCCg -3'
miRNA:   3'- caGCUUCUuGAGu---CGUGAGCGu-----AGGG- -5'
22044 3' -51.5 NC_004927.1 + 27195 0.66 0.941226
Target:  5'- -gUGGAGGGCgCAGuUACUCGuCGUCCg -3'
miRNA:   3'- caGCUUCUUGaGUC-GUGAGC-GUAGGg -5'
22044 3' -51.5 NC_004927.1 + 32402 0.66 0.924956
Target:  5'- uGUCGAacgucAGAACaCGGgGCggCGCGUCCa -3'
miRNA:   3'- -CAGCU-----UCUUGaGUCgUGa-GCGUAGGg -5'
22044 3' -51.5 NC_004927.1 + 25835 0.66 0.924956
Target:  5'- cGUCGAAGuuCUCuGCGa--GCGUCCg -3'
miRNA:   3'- -CAGCUUCuuGAGuCGUgagCGUAGGg -5'
22044 3' -51.5 NC_004927.1 + 40921 0.67 0.912716
Target:  5'- -cCGAAGGccacCUCGGUAaagCGCGUCCUu -3'
miRNA:   3'- caGCUUCUu---GAGUCGUga-GCGUAGGG- -5'
22044 3' -51.5 NC_004927.1 + 21718 0.67 0.912716
Target:  5'- -cCGgcGAACgucUCAGCAUcgagaaccuUCGCGUCCg -3'
miRNA:   3'- caGCuuCUUG---AGUCGUG---------AGCGUAGGg -5'
22044 3' -51.5 NC_004927.1 + 32978 0.67 0.910784
Target:  5'- aGUUGAGGAACUUuugGGUguucuccgaguauaGCUCGUAgaagCCCu -3'
miRNA:   3'- -CAGCUUCUUGAG---UCG--------------UGAGCGUa---GGG- -5'
22044 3' -51.5 NC_004927.1 + 38543 0.67 0.906181
Target:  5'- aGUUGAGGAACUUGGUAaucgaCGCAUCg- -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUga---GCGUAGgg -5'
22044 3' -51.5 NC_004927.1 + 75131 0.68 0.85301
Target:  5'- -aCGGAGAGCgaaccCGGCcCUCGCGUgUCg -3'
miRNA:   3'- caGCUUCUUGa----GUCGuGAGCGUAgGG- -5'
22044 3' -51.5 NC_004927.1 + 25504 0.69 0.835611
Target:  5'- cUCGGAGAGCgggaCGGCGCUgauagCGgGUUCCg -3'
miRNA:   3'- cAGCUUCUUGa---GUCGUGA-----GCgUAGGG- -5'
22044 3' -51.5 NC_004927.1 + 52271 0.69 0.835611
Target:  5'- aUCGAGGAugUuCAGCAcCUCGUugaCCUa -3'
miRNA:   3'- cAGCUUCUugA-GUCGU-GAGCGua-GGG- -5'
22044 3' -51.5 NC_004927.1 + 68701 0.71 0.716007
Target:  5'- cUCGGAGAACUCGGCcuuCUC-UGUCCg -3'
miRNA:   3'- cAGCUUCUUGAGUCGu--GAGcGUAGGg -5'
22044 3' -51.5 NC_004927.1 + 6859 0.72 0.661474
Target:  5'- cUCGAAGAcCUCGGUAUcCaCAUCCCa -3'
miRNA:   3'- cAGCUUCUuGAGUCGUGaGcGUAGGG- -5'
22044 3' -51.5 NC_004927.1 + 29493 0.73 0.628334
Target:  5'- gGUCGuGGAAC-CAGCAgUCGgCGUCCa -3'
miRNA:   3'- -CAGCuUCUUGaGUCGUgAGC-GUAGGg -5'
22044 3' -51.5 NC_004927.1 + 46672 0.73 0.588626
Target:  5'- uUCGAGGAgucgaaccGC-CAGCACUCGUucgacguugaggaguAUCCCg -3'
miRNA:   3'- cAGCUUCU--------UGaGUCGUGAGCG---------------UAGGG- -5'
22044 3' -51.5 NC_004927.1 + 20163 1.11 0.002496
Target:  5'- gGUCGAAGAACUCAGCACUCGCAUCCCc -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUGAGCGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.