miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22044 5' -55.6 NC_004927.1 + 75236 0.73 0.410548
Target:  5'- uCGGGGAgcuGGUCGAGCcaaUCCGGGUCGa-- -3'
miRNA:   3'- -GCCCCU---CCAGCUUG---AGGUUCAGUcgg -5'
22044 5' -55.6 NC_004927.1 + 72523 0.67 0.757003
Target:  5'- aGGGGcaGUCGAACUCgCGuaUCAGCg -3'
miRNA:   3'- gCCCCucCAGCUUGAG-GUucAGUCGg -5'
22044 5' -55.6 NC_004927.1 + 69784 0.7 0.578835
Target:  5'- uGGGGAGGUC-AAgUCCcgaGAGUCGGg- -3'
miRNA:   3'- gCCCCUCCAGcUUgAGG---UUCAGUCgg -5'
22044 5' -55.6 NC_004927.1 + 64028 0.72 0.476558
Target:  5'- aCGGuGGGGGUgaGAGCUUCAAcaucGUCGGUCa -3'
miRNA:   3'- -GCC-CCUCCAg-CUUGAGGUU----CAGUCGG- -5'
22044 5' -55.6 NC_004927.1 + 59411 0.76 0.262804
Target:  5'- gCGGcGGAGGUCGcACUCCAAacUCGGCa -3'
miRNA:   3'- -GCC-CCUCCAGCuUGAGGUUc-AGUCGg -5'
22044 5' -55.6 NC_004927.1 + 57989 0.66 0.823174
Target:  5'- gCGGuGGuuuGGUUG-ACUCagguuaucAGUCAGCCg -3'
miRNA:   3'- -GCC-CCu--CCAGCuUGAGgu------UCAGUCGG- -5'
22044 5' -55.6 NC_004927.1 + 38764 0.69 0.610623
Target:  5'- gCGGGcuucgucGGcGUCGAACUCCGAGUgcGCCc -3'
miRNA:   3'- -GCCCc------UC-CAGCUUGAGGUUCAguCGG- -5'
22044 5' -55.6 NC_004927.1 + 36349 0.74 0.350521
Target:  5'- uGGGGucguaGGcGUCGuagGACUUCAAGUUAGCCa -3'
miRNA:   3'- gCCCC-----UC-CAGC---UUGAGGUUCAGUCGG- -5'
22044 5' -55.6 NC_004927.1 + 34165 0.68 0.684988
Target:  5'- cCGGGGAuuccgaugaGGUCGAAgUCgGGGUUAGa- -3'
miRNA:   3'- -GCCCCU---------CCAGCUUgAGgUUCAGUCgg -5'
22044 5' -55.6 NC_004927.1 + 20230 0.69 0.604246
Target:  5'- cCGGGGAcggacuugccacggaGGUCGAACac---GUCGGCCa -3'
miRNA:   3'- -GCCCCU---------------CCAGCUUGagguuCAGUCGG- -5'
22044 5' -55.6 NC_004927.1 + 20128 1.12 0.000904
Target:  5'- uCGGGGAGGUCGAACUCCAAGUCAGCCg -3'
miRNA:   3'- -GCCCCUCCAGCUUGAGGUUCAGUCGG- -5'
22044 5' -55.6 NC_004927.1 + 15434 0.67 0.74699
Target:  5'- uCGGGGucGUCGuuCUCCGGG-UAGaCCu -3'
miRNA:   3'- -GCCCCucCAGCuuGAGGUUCaGUC-GG- -5'
22044 5' -55.6 NC_004927.1 + 4606 0.66 0.794814
Target:  5'- uCGGuGGAGGUaau-CUCCGaccuucaauucgaGGUCGGCUu -3'
miRNA:   3'- -GCC-CCUCCAgcuuGAGGU-------------UCAGUCGG- -5'
22044 5' -55.6 NC_004927.1 + 3012 0.68 0.705954
Target:  5'- cCGGGGA-GUCGAACcCCGG---AGCCg -3'
miRNA:   3'- -GCCCCUcCAGCUUGaGGUUcagUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.