#
miRNA: 3'- -UAGCUCGCCCUCUUGUCUCGGAUGAG- -5'
miRNA: 3'- uaGCUCgCCCUCUUGUCuCGGA---UGAG- -5'
miRNA: 3'- uaGCUCGCCC------------UCU----UGUCUCG----------GAUGAG- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
|
P value |
| Predicted miRNA align pattern | |||||||
| 22045 | 3' | -55.5 | NC_004927.1 | + | 22317 | 1.08 | 0.001334 |
|
Target: 5'- cAUCGAGCGGGAGAACAGAGCCUACUCg -3' miRNA: 3'- -UAGCUCGCCCUCUUGUCUCGGAUGAG- -5' |
|||||||
| 22045 | 3' | -55.5 | NC_004927.1 | + | 31058 | 0.74 | 0.312301 |
|
Target: 5'- -cCGAGaGGGAGGACGG-GCCUuccGCUCg -3' miRNA: 3'- uaGCUCgCCCUCUUGUCuCGGA---UGAG- -5' |
|||||||
| 22045 | 3' | -55.5 | NC_004927.1 | + | 50348 | 0.66 | 0.738358 |
|
Target: 5'- -aCGAGCGGGucugcauccgcuGGAggcgGCGGAGCagguggcaguCUGCUCu -3' miRNA: 3'- uaGCUCGCCC------------UCU----UGUCUCG----------GAUGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home