miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22046 5' -56.8 NC_004927.1 + 21331 0.66 0.705469
Target:  5'- gGAGcGCCGuuGUCGUcGGUGGCGAACCa-- -3'
miRNA:   3'- -CUC-CGGC--CAGUA-UCGCUGCUUGGgag -5'
22046 5' -56.8 NC_004927.1 + 20351 0.67 0.673803
Target:  5'- cGGGCCGGuugguUCAUcgaaggagacAGCGGCGGcCCCa- -3'
miRNA:   3'- cUCCGGCC-----AGUA----------UCGCUGCUuGGGag -5'
22046 5' -56.8 NC_004927.1 + 33846 0.67 0.637523
Target:  5'- cGGGUCGGUCGgcaucccguacucGGCGGCGAggucaacguACaCCUCg -3'
miRNA:   3'- cUCCGGCCAGUa------------UCGCUGCU---------UG-GGAG- -5'
22046 5' -56.8 NC_004927.1 + 33165 0.67 0.631105
Target:  5'- cGGGUuggCGGUCGgccCGGCGuAGCCCUCg -3'
miRNA:   3'- cUCCG---GCCAGUaucGCUGC-UUGGGAG- -5'
22046 5' -56.8 NC_004927.1 + 34509 0.68 0.588415
Target:  5'- cGAGuCCGGUCu--GCGACuguCCCUCa -3'
miRNA:   3'- -CUCcGGCCAGuauCGCUGcuuGGGAG- -5'
22046 5' -56.8 NC_004927.1 + 69862 0.7 0.475187
Target:  5'- --cGCCGGgCGUGGCGACaggguacaGAACCCUg -3'
miRNA:   3'- cucCGGCCaGUAUCGCUG--------CUUGGGAg -5'
22046 5' -56.8 NC_004927.1 + 32177 0.71 0.436687
Target:  5'- cGAGGCCGGUCuugucGGUGucuuCGuACCCUUc -3'
miRNA:   3'- -CUCCGGCCAGua---UCGCu---GCuUGGGAG- -5'
22046 5' -56.8 NC_004927.1 + 43187 0.72 0.357099
Target:  5'- cGGGCCGuGUCGUacAGCGGCauccGAACCCg- -3'
miRNA:   3'- cUCCGGC-CAGUA--UCGCUG----CUUGGGag -5'
22046 5' -56.8 NC_004927.1 + 22536 1.08 0.001138
Target:  5'- aGAGGCCGGUCAUAGCGACGAACCCUCc -3'
miRNA:   3'- -CUCCGGCCAGUAUCGCUGCUUGGGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.