miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22048 5' -53 NC_004927.1 + 62593 0.66 0.902401
Target:  5'- uCC-CAuauGCGACAAGUgGGGCcgaugaacgcgaaGCGAAUCa -3'
miRNA:   3'- -GGaGU---CGCUGUUCGaCCUG-------------CGCUUAG- -5'
22048 5' -53 NC_004927.1 + 52845 0.66 0.896222
Target:  5'- gCUcCGGCGGCGcuccGGUgaaGGACGCGAc-- -3'
miRNA:   3'- gGA-GUCGCUGU----UCGa--CCUGCGCUuag -5'
22048 5' -53 NC_004927.1 + 63555 0.66 0.896222
Target:  5'- --gCGGUGACAGGCUcGACcuCGAAUCc -3'
miRNA:   3'- ggaGUCGCUGUUCGAcCUGc-GCUUAG- -5'
22048 5' -53 NC_004927.1 + 26236 0.66 0.884712
Target:  5'- aCUCAGCGAUAgacuccucgaAGUcacccggcggcuugaUGGAacccgaGCGAAUCa -3'
miRNA:   3'- gGAGUCGCUGU----------UCG---------------ACCUg-----CGCUUAG- -5'
22048 5' -53 NC_004927.1 + 21931 0.67 0.866232
Target:  5'- --cCAGCGACGAGCUGuucGACGUucuccGggUUc -3'
miRNA:   3'- ggaGUCGCUGUUCGAC---CUGCG-----CuuAG- -5'
22048 5' -53 NC_004927.1 + 53575 0.67 0.848925
Target:  5'- aCCUCccGGCcaacuccGGCGAGCUGGuCGUGAc-- -3'
miRNA:   3'- -GGAG--UCG-------CUGUUCGACCuGCGCUuag -5'
22048 5' -53 NC_004927.1 + 75243 0.67 0.841201
Target:  5'- gUCUCGGuCGGgGAGCUGGuCGagccaaucCGggUCg -3'
miRNA:   3'- -GGAGUC-GCUgUUCGACCuGC--------GCuuAG- -5'
22048 5' -53 NC_004927.1 + 68435 0.67 0.833301
Target:  5'- cUCUCGGUgagGACGAGCUGGcaaacuucucuaucuCGCGGAa- -3'
miRNA:   3'- -GGAGUCG---CUGUUCGACCu--------------GCGCUUag -5'
22048 5' -53 NC_004927.1 + 16361 0.67 0.832412
Target:  5'- aCUCAcgaacGCGACcgcuucgagaggGAGCUGGAacgaGCGGAUg -3'
miRNA:   3'- gGAGU-----CGCUG------------UUCGACCUg---CGCUUAg -5'
22048 5' -53 NC_004927.1 + 59883 0.68 0.823416
Target:  5'- uCCUCGaaGACAAGCUGGAgaUGGAUa -3'
miRNA:   3'- -GGAGUcgCUGUUCGACCUgcGCUUAg -5'
22048 5' -53 NC_004927.1 + 12934 0.68 0.794312
Target:  5'- cCCUCgaAGCccaucacuugacgGGCGAGCUGGuCGauaGAAUCa -3'
miRNA:   3'- -GGAG--UCG-------------CUGUUCGACCuGCg--CUUAG- -5'
22048 5' -53 NC_004927.1 + 71741 0.7 0.681437
Target:  5'- aCC-CGGCGGCGguGGCUGa--GCGAAUCu -3'
miRNA:   3'- -GGaGUCGCUGU--UCGACcugCGCUUAG- -5'
22048 5' -53 NC_004927.1 + 12668 0.71 0.659705
Target:  5'- aCCUCAGCGGCGugAGCcGGuCGaacCGAGUUg -3'
miRNA:   3'- -GGAGUCGCUGU--UCGaCCuGC---GCUUAG- -5'
22048 5' -53 NC_004927.1 + 50680 0.71 0.626943
Target:  5'- uCCUUuGCGACGGGCaGGAUgGCGAAa- -3'
miRNA:   3'- -GGAGuCGCUGUUCGaCCUG-CGCUUag -5'
22048 5' -53 NC_004927.1 + 65506 0.72 0.605108
Target:  5'- aCCUCGGCGGCAacgaaAGCgacGGCGgGAGUg -3'
miRNA:   3'- -GGAGUCGCUGU-----UCGac-CUGCgCUUAg -5'
22048 5' -53 NC_004927.1 + 13989 0.73 0.518291
Target:  5'- uCCUCAGCGugGucgaaguaggugaAGCUa-ACGCGAGUCu -3'
miRNA:   3'- -GGAGUCGCugU-------------UCGAccUGCGCUUAG- -5'
22048 5' -53 NC_004927.1 + 33140 0.73 0.498588
Target:  5'- cCCUCGGUGugGAGCUuccgGCGAAUCa -3'
miRNA:   3'- -GGAGUCGCugUUCGAccugCGCUUAG- -5'
22048 5' -53 NC_004927.1 + 31443 0.75 0.438765
Target:  5'- aCUUCAuuaucgguGCGACAAGCUGGACGU---UCg -3'
miRNA:   3'- -GGAGU--------CGCUGUUCGACCUGCGcuuAG- -5'
22048 5' -53 NC_004927.1 + 46500 0.76 0.374471
Target:  5'- uCCUgAGCGACAAGCUGGAgGaCGu--- -3'
miRNA:   3'- -GGAgUCGCUGUUCGACCUgC-GCuuag -5'
22048 5' -53 NC_004927.1 + 24266 1.13 0.001472
Target:  5'- gCCUCAGCGACAAGCUGGACGCGAAUCa -3'
miRNA:   3'- -GGAGUCGCUGUUCGACCUGCGCUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.