miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22049 3' -57.3 NC_004927.1 + 32196 0.66 0.711839
Target:  5'- aCCAGCUCCUCGucGUUCacgagGCCGGu--- -3'
miRNA:   3'- -GGUCGAGGAGCuaCGAG-----UGGCCcugu -5'
22049 3' -57.3 NC_004927.1 + 46170 0.66 0.701488
Target:  5'- aCCGGCUCgcuCUCGAacgugggGCguucuccUACUGGGACAa -3'
miRNA:   3'- -GGUCGAG---GAGCUa------CGa------GUGGCCCUGU- -5'
22049 3' -57.3 NC_004927.1 + 51869 0.67 0.626769
Target:  5'- aCGGaacuucuUUCCUCucUGCUCagACCGGGACGa -3'
miRNA:   3'- gGUC-------GAGGAGcuACGAG--UGGCCCUGU- -5'
22049 3' -57.3 NC_004927.1 + 24038 0.67 0.617246
Target:  5'- aCCAGUUCuaCUCGAuUGUUCACCGGc--- -3'
miRNA:   3'- -GGUCGAG--GAGCU-ACGAGUGGCCcugu -5'
22049 3' -57.3 NC_004927.1 + 58538 0.68 0.596128
Target:  5'- uCCGGUguugcuaCCUCGAUGCUCgcuaugGCCGGuGCu -3'
miRNA:   3'- -GGUCGa------GGAGCUACGAG------UGGCCcUGu -5'
22049 3' -57.3 NC_004927.1 + 4214 0.68 0.596128
Target:  5'- aCAGUccaUCCUCGAUucGgUCuuCCGGGGCGu -3'
miRNA:   3'- gGUCG---AGGAGCUA--CgAGu-GGCCCUGU- -5'
22049 3' -57.3 NC_004927.1 + 3280 0.68 0.575122
Target:  5'- uCCGGCUCuCUCGuugGCUCgugAUgGGGAUg -3'
miRNA:   3'- -GGUCGAG-GAGCua-CGAG---UGgCCCUGu -5'
22049 3' -57.3 NC_004927.1 + 47423 0.69 0.543956
Target:  5'- aCAGC-CCgacgcUGAUGaaCGCCGGGACGg -3'
miRNA:   3'- gGUCGaGGa----GCUACgaGUGGCCCUGU- -5'
22049 3' -57.3 NC_004927.1 + 21458 0.69 0.493359
Target:  5'- aCAGUUgC-CGAgGCUCACCGGGuCGu -3'
miRNA:   3'- gGUCGAgGaGCUaCGAGUGGCCCuGU- -5'
22049 3' -57.3 NC_004927.1 + 61761 0.69 0.493359
Target:  5'- aCCcGCaacaUCCUCGAUGCucUCACCgagGGGGCc -3'
miRNA:   3'- -GGuCG----AGGAGCUACG--AGUGG---CCCUGu -5'
22049 3' -57.3 NC_004927.1 + 22220 0.81 0.099463
Target:  5'- uCCAGCUCCUCGAUGaCUUccuCCGGGuCGu -3'
miRNA:   3'- -GGUCGAGGAGCUAC-GAGu--GGCCCuGU- -5'
22049 3' -57.3 NC_004927.1 + 24584 1.1 0.000833
Target:  5'- aCCAGCUCCUCGAUGCUCACCGGGACAc -3'
miRNA:   3'- -GGUCGAGGAGCUACGAGUGGCCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.