miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22057 3' -55 NC_004927.1 + 31686 1.05 0.002825
Target:  5'- uAUCACCGUUCAGGAAAGCCGCCGUGUc -3'
miRNA:   3'- -UAGUGGCAAGUCCUUUCGGCGGCACA- -5'
22057 3' -55 NC_004927.1 + 24319 0.68 0.654617
Target:  5'- uGUgGCCGgaCAGGGAAGCuCGCCa--- -3'
miRNA:   3'- -UAgUGGCaaGUCCUUUCG-GCGGcaca -5'
22057 3' -55 NC_004927.1 + 23264 0.68 0.697884
Target:  5'- cGUCGgCGggagugaUUAGGAGAGUCGCCGUc- -3'
miRNA:   3'- -UAGUgGCa------AGUCCUUUCGGCGGCAca -5'
22057 3' -55 NC_004927.1 + 2092 0.66 0.80011
Target:  5'- uUCACCGUauucUCAacGAAGUCGCCGUc- -3'
miRNA:   3'- uAGUGGCA----AGUccUUUCGGCGGCAca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.