miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22059 3' -55.1 NC_004927.1 + 33373 1.08 0.001794
Target:  5'- cGAGGUCGCCUCCUUCUUCGAGGACAGc -3'
miRNA:   3'- -CUCCAGCGGAGGAAGAAGCUCCUGUC- -5'
22059 3' -55.1 NC_004927.1 + 23741 0.74 0.335977
Target:  5'- -cGGUCGCUUCUucgaccuuUUCUUCGAGGAUg- -3'
miRNA:   3'- cuCCAGCGGAGG--------AAGAAGCUCCUGuc -5'
22059 3' -55.1 NC_004927.1 + 42578 0.74 0.368994
Target:  5'- aGAGGUCGCCUUCgauuUCcUCGAagucgaacuucaGGACAGa -3'
miRNA:   3'- -CUCCAGCGGAGGa---AGaAGCU------------CCUGUC- -5'
22059 3' -55.1 NC_004927.1 + 14668 0.73 0.395177
Target:  5'- cGAGGaagaUUGCCgcUCCgUCUUCGAGGAUGGg -3'
miRNA:   3'- -CUCC----AGCGG--AGGaAGAAGCUCCUGUC- -5'
22059 3' -55.1 NC_004927.1 + 65694 0.71 0.520129
Target:  5'- cGAGGUCGCCaaaggauUCCgaaUCaUCGAcgGGGCAGa -3'
miRNA:   3'- -CUCCAGCGG-------AGGa--AGaAGCU--CCUGUC- -5'
22059 3' -55.1 NC_004927.1 + 49281 0.69 0.649111
Target:  5'- aGGGGUCGUgggUUCUUCUaagCGAGGACGc -3'
miRNA:   3'- -CUCCAGCGg--AGGAAGAa--GCUCCUGUc -5'
22059 3' -55.1 NC_004927.1 + 9946 0.67 0.723665
Target:  5'- --cGUCGaggaUUUCUUCUUCGAGGGCGu -3'
miRNA:   3'- cucCAGCg---GAGGAAGAAGCUCCUGUc -5'
22059 3' -55.1 NC_004927.1 + 53357 0.66 0.774498
Target:  5'- cAGGUCGaUUCUacCUUCGAGGACGa -3'
miRNA:   3'- cUCCAGCgGAGGaaGAAGCUCCUGUc -5'
22059 3' -55.1 NC_004927.1 + 10932 0.66 0.784283
Target:  5'- cAGGacUCGcCCUCCgUCUcgUCGGGGAgGGa -3'
miRNA:   3'- cUCC--AGC-GGAGGaAGA--AGCUCCUgUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.