miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22060 5' -56.5 NC_004927.1 + 31809 0.66 0.75059
Target:  5'- -aCCACGAGUucuUCGCGGuguuuuccggugcGACuCGCUGUa -3'
miRNA:   3'- caGGUGUUCG---AGCGCC-------------UUGuGCGGCA- -5'
22060 5' -56.5 NC_004927.1 + 52587 0.67 0.646773
Target:  5'- cGUCCAgAAGCUCGCGcc---UGCCGg -3'
miRNA:   3'- -CAGGUgUUCGAGCGCcuuguGCGGCa -5'
22060 5' -56.5 NC_004927.1 + 59658 0.67 0.646773
Target:  5'- aGUCCAuCGAGaUUGCGGAGCGugUGCUGg -3'
miRNA:   3'- -CAGGU-GUUCgAGCGCCUUGU--GCGGCa -5'
22060 5' -56.5 NC_004927.1 + 20279 0.68 0.603923
Target:  5'- cUCCACGAGUUCGuuGAACuucggaACGaCCGUa -3'
miRNA:   3'- cAGGUGUUCGAGCgcCUUG------UGC-GGCA- -5'
22060 5' -56.5 NC_004927.1 + 14311 0.69 0.561434
Target:  5'- cUCCGCGuacauCUCGCGGAGaACGUCGUu -3'
miRNA:   3'- cAGGUGUuc---GAGCGCCUUgUGCGGCA- -5'
22060 5' -56.5 NC_004927.1 + 35943 0.69 0.530105
Target:  5'- aGUCCgGCAucgucuuuAGCUCGUGGAuagcgagcugACACGCCc- -3'
miRNA:   3'- -CAGG-UGU--------UCGAGCGCCU----------UGUGCGGca -5'
22060 5' -56.5 NC_004927.1 + 67533 0.7 0.509577
Target:  5'- uUCCGCGAccuGUUCGUGGAGCAgGuuGa -3'
miRNA:   3'- cAGGUGUU---CGAGCGCCUUGUgCggCa -5'
22060 5' -56.5 NC_004927.1 + 54761 0.7 0.469584
Target:  5'- cUCCACGAGUgaccccggCGCGGGGacaGCGaCCGUg -3'
miRNA:   3'- cAGGUGUUCGa-------GCGCCUUg--UGC-GGCA- -5'
22060 5' -56.5 NC_004927.1 + 53720 0.71 0.450196
Target:  5'- cUCCGCGAGCgagCGaaggaGGAACuuGCCGa -3'
miRNA:   3'- cAGGUGUUCGa--GCg----CCUUGugCGGCa -5'
22060 5' -56.5 NC_004927.1 + 57148 0.71 0.421964
Target:  5'- cGUUCAgAcGCUUGCGGAACACGaCGg -3'
miRNA:   3'- -CAGGUgUuCGAGCGCCUUGUGCgGCa -5'
22060 5' -56.5 NC_004927.1 + 14582 0.71 0.412792
Target:  5'- uUCCACGGcGCUCGUGGGuCGCcaGCCGa -3'
miRNA:   3'- cAGGUGUU-CGAGCGCCUuGUG--CGGCa -5'
22060 5' -56.5 NC_004927.1 + 73966 0.72 0.368838
Target:  5'- -aCCGCGAGCgCGaCGGAACAgcuCGCCGc -3'
miRNA:   3'- caGGUGUUCGaGC-GCCUUGU---GCGGCa -5'
22060 5' -56.5 NC_004927.1 + 33448 1.07 0.001566
Target:  5'- cGUCCACAAGCUCGCGGAACACGCCGUc -3'
miRNA:   3'- -CAGGUGUUCGAGCGCCUUGUGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.