miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22066	5'	-55.6	NC_004927.1	+	21753	0.67	0.733197
	Target:  5'- --cGUcGUC-GUCGCCGCCCGAguuggcgauagugauACCg -3' miRNA:   3'- caaCAcCAGuCAGUGGCGGGCU---------------UGGa -5'
22066	5'	-55.6	NC_004927.1	+	35807	0.67	0.72906
	Target:  5'- aUUGUGGaugaaCAGgccgaGCCGCCCGA-CCg -3' miRNA:   3'- cAACACCa----GUCag---UGGCGGGCUuGGa -5'
22066	5'	-55.6	NC_004927.1	+	27528	0.68	0.633328
	Target:  5'- --cGUGGUCGGUCACUuCCuCGcaAACCg -3' miRNA:   3'- caaCACCAGUCAGUGGcGG-GC--UUGGa -5'
22066	5'	-55.6	NC_004927.1	+	29233	0.69	0.611791
	Target:  5'- cUUGUGGUCAGUUAucUCGUCCuucggcuucguaGAGCCa -3' miRNA:   3'- cAACACCAGUCAGU--GGCGGG------------CUUGGa -5'
22066	5'	-55.6	NC_004927.1	+	19059	0.69	0.601043
	Target:  5'- --gGUGuagaaGUCAGUCACCGCuuCCGggUCg -3' miRNA:   3'- caaCAC-----CAGUCAGUGGCG--GGCuuGGa -5'
22066	5'	-55.6	NC_004927.1	+	57568	0.69	0.590321
	Target:  5'- cGUUGaugGGUCGGUUgACgGCCCGA-CCg -3' miRNA:   3'- -CAACa--CCAGUCAG-UGgCGGGCUuGGa -5'
22066	5'	-55.6	NC_004927.1	+	36718	1.07	0.001794
	Target:  5'- cGUUGUGGUCAGUCACCGCCCGAACCUu -3' miRNA:   3'- -CAACACCAGUCAGUGGCGGGCUUGGA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home