miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22070	3'	-57.9	NC_004927.1	+	71357	0.66	0.691618
	Target:  5'- -aGUCgCGGAACCuCcAGCAGAGggaagACGUa -3' miRNA:   3'- agCGG-GCCUUGG-GcUCGUCUCa----UGCA- -5'
22070	3'	-57.9	NC_004927.1	+	58936	0.66	0.669687
	Target:  5'- cUGCCCGGAuggaaggcgcgggAUUCG-GCAcGAGUGCGa -3' miRNA:   3'- aGCGGGCCU-------------UGGGCuCGU-CUCAUGCa -5'
22070	3'	-57.9	NC_004927.1	+	12360	0.67	0.586593
	Target:  5'- -gGCuCCGGcccACCgGAGCAGGGUuCGUu -3' miRNA:   3'- agCG-GGCCu--UGGgCUCGUCUCAuGCA- -5'
22070	3'	-57.9	NC_004927.1	+	54426	0.68	0.576148
	Target:  5'- gUCGCgCGGAggcacgauuACCUGAGCGGAauugACGg -3' miRNA:   3'- -AGCGgGCCU---------UGGGCUCGUCUca--UGCa -5'
22070	3'	-57.9	NC_004927.1	+	25952	0.68	0.545095
	Target:  5'- aCGCCCGGAcaACCgcauCGAGCAuccGGUACa- -3' miRNA:   3'- aGCGGGCCU--UGG----GCUCGUc--UCAUGca -5'
22070	3'	-57.9	NC_004927.1	+	18264	0.68	0.524695
	Target:  5'- gUCGUCCGGcaacggucauGGCCCGAaCGGAG-ACGUu -3' miRNA:   3'- -AGCGGGCC----------UUGGGCUcGUCUCaUGCA- -5'
22070	3'	-57.9	NC_004927.1	+	38812	1.07	0.001248
	Target:  5'- gUCGCCCGGAACCCGAGCAGAGUACGUu -3' miRNA:   3'- -AGCGGGCCUUGGGCUCGUCUCAUGCA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home