miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22071 5' -54.5 NC_004927.1 + 18326 0.66 0.817318
Target:  5'- --uGUCCCguuGAGGGAUGuGaCCACGAAg -3'
miRNA:   3'- uugUAGGG---CUUCCUGCuCaGGUGCUU- -5'
22071 5' -54.5 NC_004927.1 + 68009 0.67 0.768854
Target:  5'- uGGCGUCCUGAuGGAgGAcGUgCGCGAc -3'
miRNA:   3'- -UUGUAGGGCUuCCUgCU-CAgGUGCUu -5'
22071 5' -54.5 NC_004927.1 + 31063 0.68 0.706221
Target:  5'- -uCGUCCCGAgagggAGGACGGGccuUCCGCu-- -3'
miRNA:   3'- uuGUAGGGCU-----UCCUGCUC---AGGUGcuu -5'
22071 5' -54.5 NC_004927.1 + 29049 0.68 0.688981
Target:  5'- uGCAUCCCG-AGGACGGccuugcggaugauguGUCgGCGGu -3'
miRNA:   3'- uUGUAGGGCuUCCUGCU---------------CAGgUGCUu -5'
22071 5' -54.5 NC_004927.1 + 38098 0.69 0.65194
Target:  5'- gAGCGUCCCGAGagagcGGauuGCGuAGUCCACGu- -3'
miRNA:   3'- -UUGUAGGGCUU-----CC---UGC-UCAGGUGCuu -5'
22071 5' -54.5 NC_004927.1 + 58779 0.73 0.431358
Target:  5'- uAACGUCCCGuGGGGCGGuguGUCCuCGGAu -3'
miRNA:   3'- -UUGUAGGGCuUCCUGCU---CAGGuGCUU- -5'
22071 5' -54.5 NC_004927.1 + 39884 1.04 0.003351
Target:  5'- gAACAUCCCGAAGGACGAGUCCACGAAg -3'
miRNA:   3'- -UUGUAGGGCUUCCUGCUCAGGUGCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.