miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22072	3'	-55.7	NC_004927.1	+	51650	0.66	0.816309
	Target:  5'- uCCAGUauaaCGACGGUGACGgcaacguugaacucuAuacugguaGCGGGACUg -3' miRNA:   3'- -GGUCAg---GUUGCCGCUGC---------------U--------CGCUCUGA- -5'
22072	3'	-55.7	NC_004927.1	+	50800	0.66	0.812702
	Target:  5'- -aAGUCauCAACGGCccgcCGGGUGGGGCUg -3' miRNA:   3'- ggUCAG--GUUGCCGcu--GCUCGCUCUGA- -5'
22072	3'	-55.7	NC_004927.1	+	67818	0.66	0.784793
	Target:  5'- aCCcGUCUAucucgcuccggGCGGCGGCGuGaCGcAGACUg -3' miRNA:   3'- -GGuCAGGU-----------UGCCGCUGCuC-GC-UCUGA- -5'
22072	3'	-55.7	NC_004927.1	+	32904	0.66	0.775181
	Target:  5'- uCCAGcUCCAucugaGCGGCGuuauCGAGUGAcccGCUg -3' miRNA:   3'- -GGUC-AGGU-----UGCCGCu---GCUCGCUc--UGA- -5'
22072	3'	-55.7	NC_004927.1	+	64670	0.68	0.662627
	Target:  5'- aCCGGcgugCUuACGGCG-CGAuGCGGGACa -3' miRNA:   3'- -GGUCa---GGuUGCCGCuGCU-CGCUCUGa -5'
22072	3'	-55.7	NC_004927.1	+	61337	0.69	0.635064
	Target:  5'- cUCAGUCCAaggucaACGGaauGGCGAGCGAauacaaccuugcgcuGGCUa -3' miRNA:   3'- -GGUCAGGU------UGCCg--CUGCUCGCU---------------CUGA- -5'
22072	3'	-55.7	NC_004927.1	+	55032	0.69	0.620205
	Target:  5'- gCC-GUCCA-CGGUgcGACGuGUGAGGCUg -3' miRNA:   3'- -GGuCAGGUuGCCG--CUGCuCGCUCUGA- -5'
22072	3'	-55.7	NC_004927.1	+	42327	0.74	0.358664
	Target:  5'- aUCAGcCCGuugGCGGCGACGGGguaggcauCGAGGCUg -3' miRNA:   3'- -GGUCaGGU---UGCCGCUGCUC--------GCUCUGA- -5'
22072	3'	-55.7	NC_004927.1	+	54986	0.8	0.145466
	Target:  5'- gUCAGUCC-ACGGUGACGGGaGAGACg -3' miRNA:   3'- -GGUCAGGuUGCCGCUGCUCgCUCUGa -5'
22072	3'	-55.7	NC_004927.1	+	40190	1.1	0.001384
	Target:  5'- gCCAGUCCAACGGCGACGAGCGAGACUa -3' miRNA:   3'- -GGUCAGGUUGCCGCUGCUCGCUCUGA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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