miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22073 3' -59.8 NC_004927.1 + 35788 0.66 0.56596
Target:  5'- aGCCGCCCGa--CCGAGCuacguCCGUgGAGg -3'
miRNA:   3'- aUGGUGGGCgcgGGCUUG-----GGUAgCUC- -5'
22073 3' -59.8 NC_004927.1 + 59684 0.66 0.555684
Target:  5'- aACUAUCCGUGaCCUGAuuggcggcaaGUCCAUCGAGa -3'
miRNA:   3'- aUGGUGGGCGC-GGGCU----------UGGGUAGCUC- -5'
22073 3' -59.8 NC_004927.1 + 58980 0.67 0.525211
Target:  5'- aUACCACCuCGCGUUCGGGCgCGgggaUGAGu -3'
miRNA:   3'- -AUGGUGG-GCGCGGGCUUGgGUa---GCUC- -5'
22073 3' -59.8 NC_004927.1 + 61812 0.67 0.505251
Target:  5'- -gUCACUCGCGCUaCGAagGCCCG-CGAGu -3'
miRNA:   3'- auGGUGGGCGCGG-GCU--UGGGUaGCUC- -5'
22073 3' -59.8 NC_004927.1 + 36733 0.67 0.492453
Target:  5'- aGCCAcaaacguuCCCGUuguggucagucaccGCCCGAACCU-UCGAGu -3'
miRNA:   3'- aUGGU--------GGGCG--------------CGGGCUUGGGuAGCUC- -5'
22073 3' -59.8 NC_004927.1 + 867 0.68 0.466368
Target:  5'- gUACuUACCCGCcCCCGA-CCguUCGGGg -3'
miRNA:   3'- -AUG-GUGGGCGcGGGCUuGGguAGCUC- -5'
22073 3' -59.8 NC_004927.1 + 53872 0.68 0.438247
Target:  5'- cUACCGCCCcaauCGCUucgguCGAACCCGgagCGAGc -3'
miRNA:   3'- -AUGGUGGGc---GCGG-----GCUUGGGUa--GCUC- -5'
22073 3' -59.8 NC_004927.1 + 12428 0.72 0.259072
Target:  5'- uUGCCGucUCCGCGCuuGuuuUCCAUCGAGg -3'
miRNA:   3'- -AUGGU--GGGCGCGggCuu-GGGUAGCUC- -5'
22073 3' -59.8 NC_004927.1 + 27787 0.72 0.240681
Target:  5'- cACCGCCCuGCGCUCGGGCCaguUUGAa -3'
miRNA:   3'- aUGGUGGG-CGCGGGCUUGGgu-AGCUc -5'
22073 3' -59.8 NC_004927.1 + 67120 0.77 0.119943
Target:  5'- gGCgCACCgCGCGUCCGAACaCAUCGAGu -3'
miRNA:   3'- aUG-GUGG-GCGCGGGCUUGgGUAGCUC- -5'
22073 3' -59.8 NC_004927.1 + 40614 1.06 0.000881
Target:  5'- aUACCACCCGCGCCCGAACCCAUCGAGu -3'
miRNA:   3'- -AUGGUGGGCGCGGGCUUGGGUAGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.