miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22075 3' -55.6 NC_004927.1 + 26556 0.66 0.78928
Target:  5'- uGGUAGCGGCGGAggugggUCGGCauccaGUCGuACu -3'
miRNA:   3'- gUCAUUGCCGCUU------GGCCGg----UAGCcUG- -5'
22075 3' -55.6 NC_004927.1 + 11628 0.66 0.78928
Target:  5'- cCGGUGuuccuCGGgGAA-CGG-CAUCGGACg -3'
miRNA:   3'- -GUCAUu----GCCgCUUgGCCgGUAGCCUG- -5'
22075 3' -55.6 NC_004927.1 + 36824 0.66 0.769844
Target:  5'- uGGUAGuucacgccgUGGU-AGCCGGUCGUCGGAa -3'
miRNA:   3'- gUCAUU---------GCCGcUUGGCCGGUAGCCUg -5'
22075 3' -55.6 NC_004927.1 + 58507 0.66 0.769844
Target:  5'- cCGGUGcugguGCGGCGuucAUCGGCC-UCGGu- -3'
miRNA:   3'- -GUCAU-----UGCCGCu--UGGCCGGuAGCCug -5'
22075 3' -55.6 NC_004927.1 + 33179 0.66 0.759919
Target:  5'- uCGGUuuccucCGGCGggUUGGCgGUCGGcCc -3'
miRNA:   3'- -GUCAuu----GCCGCuuGGCCGgUAGCCuG- -5'
22075 3' -55.6 NC_004927.1 + 61897 0.67 0.739706
Target:  5'- gAGUGGgGGCGcuCCuGCCgacguuggacucGUCGGACa -3'
miRNA:   3'- gUCAUUgCCGCuuGGcCGG------------UAGCCUG- -5'
22075 3' -55.6 NC_004927.1 + 8164 0.67 0.72944
Target:  5'- -----cCGGaUGAACCgGGUCGUCGGGCu -3'
miRNA:   3'- gucauuGCC-GCUUGG-CCGGUAGCCUG- -5'
22075 3' -55.6 NC_004927.1 + 57720 0.67 0.719081
Target:  5'- aCGGUAAuCGGCGcucuGCUGGUCGguggUGGAUa -3'
miRNA:   3'- -GUCAUU-GCCGCu---UGGCCGGUa---GCCUG- -5'
22075 3' -55.6 NC_004927.1 + 50386 0.68 0.676933
Target:  5'- gCGGUggUGGUGGuGCUGGCgGUCaGACu -3'
miRNA:   3'- -GUCAuuGCCGCU-UGGCCGgUAGcCUG- -5'
22075 3' -55.6 NC_004927.1 + 61429 0.68 0.676933
Target:  5'- -cGUGACGGCGAAUCaGGCaaugGUCGauGGCg -3'
miRNA:   3'- guCAUUGCCGCUUGG-CCGg---UAGC--CUG- -5'
22075 3' -55.6 NC_004927.1 + 44956 1.09 0.001463
Target:  5'- gCAGUAACGGCGAACCGGCCAUCGGACu -3'
miRNA:   3'- -GUCAUUGCCGCUUGGCCGGUAGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.