Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22076 | 5' | -53.3 | NC_004927.1 | + | 4862 | 0.67 | 0.860038 |
Target: 5'- uGCGUCGuucaucucGGGGUcGUGG-AAGUCGGg -3' miRNA: 3'- gCGCAGCca------CCCUA-CGCCuUUUAGCC- -5' |
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22076 | 5' | -53.3 | NC_004927.1 | + | 23265 | 0.67 | 0.851901 |
Target: 5'- -aCGUCGGcGGGAgUGauuaGGAGAGUCGc -3' miRNA: 3'- gcGCAGCCaCCCU-ACg---CCUUUUAGCc -5' |
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22076 | 5' | -53.3 | NC_004927.1 | + | 8593 | 0.69 | 0.779635 |
Target: 5'- aGCGUUcGUGGG-UGUGGAGAGcuucgagauuccUCGGc -3' miRNA: 3'- gCGCAGcCACCCuACGCCUUUU------------AGCC- -5' |
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22076 | 5' | -53.3 | NC_004927.1 | + | 58972 | 0.7 | 0.708641 |
Target: 5'- uCGCGuUCGGgcgcgGGGAugaguaUGCGGGAAAUucugccCGGa -3' miRNA: 3'- -GCGC-AGCCa----CCCU------ACGCCUUUUA------GCC- -5' |
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22076 | 5' | -53.3 | NC_004927.1 | + | 46322 | 1.12 | 0.002015 |
Target: 5'- gCGCGUCGGUGGGAUGCGGAAAAUCGGa -3' miRNA: 3'- -GCGCAGCCACCCUACGCCUUUUAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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