miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22078 3' -56.1 NC_004927.1 + 288 0.67 0.699971
Target:  5'- ---aGGggCAgggGCCGAcCGGCCCGAg -3'
miRNA:   3'- gaggCCaaGUa--CGGCUuGUCGGGCUg -5'
22078 3' -56.1 NC_004927.1 + 32043 0.73 0.352178
Target:  5'- gCUUCGGUUCGc-CCGAACAGUuuGGCu -3'
miRNA:   3'- -GAGGCCAAGUacGGCUUGUCGggCUG- -5'
22078 3' -56.1 NC_004927.1 + 33172 0.7 0.540483
Target:  5'- cCUCCGGcggguUGgCGGuCGGCCCGGCg -3'
miRNA:   3'- -GAGGCCaagu-ACgGCUuGUCGGGCUG- -5'
22078 3' -56.1 NC_004927.1 + 47440 1.1 0.001041
Target:  5'- gCUCCGGUUCAUGCCGAACAGCCCGACg -3'
miRNA:   3'- -GAGGCCAAGUACGGCUUGUCGGGCUG- -5'
22078 3' -56.1 NC_004927.1 + 53688 0.68 0.625337
Target:  5'- ---gGGUUCGaGCgCGAcCGGCCCGGCu -3'
miRNA:   3'- gaggCCAAGUaCG-GCUuGUCGGGCUG- -5'
22078 3' -56.1 NC_004927.1 + 56477 0.69 0.593246
Target:  5'- -cCCGGcg-AUGCuuaCGAACAGCUCGACa -3'
miRNA:   3'- gaGGCCaagUACG---GCUUGUCGGGCUG- -5'
22078 3' -56.1 NC_004927.1 + 60913 0.67 0.720883
Target:  5'- aUCCGGgUCAa--CGAACAGCCCu-- -3'
miRNA:   3'- gAGGCCaAGUacgGCUUGUCGGGcug -5'
22078 3' -56.1 NC_004927.1 + 71322 0.71 0.459836
Target:  5'- cCUCCGGUUCAgGUgGAACAgacggaggaGCgCGACg -3'
miRNA:   3'- -GAGGCCAAGUaCGgCUUGU---------CGgGCUG- -5'
22078 3' -56.1 NC_004927.1 + 75805 0.67 0.699971
Target:  5'- ---aGGggCAgggGCCGAcCGGCCCGAg -3'
miRNA:   3'- gaggCCaaGUa--CGGCUuGUCGGGCUg -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.