miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2208 3' -58.2 NC_001403.1 + 966 0.67 0.065944
Target:  5'- gGGCGGaacagccaagggCGGAGccagggCGCAgggucuGGCCCCUGGg -3'
miRNA:   3'- -UCGCUa-----------GCCUCua----GCGU------UCGGGGGCC- -5'
2208 3' -58.2 NC_001403.1 + 551 0.67 0.062026
Target:  5'- cGCGGUaauGGGAUCcCAGGaCCCCGGg -3'
miRNA:   3'- uCGCUAgc-CUCUAGcGUUCgGGGGCC- -5'
2208 3' -58.2 NC_001403.1 + 3768 0.67 0.059743
Target:  5'- aGGCcAUCGaGcAGggCGUgcggcugGAGCCCCCGGa -3'
miRNA:   3'- -UCGcUAGC-C-UCuaGCG-------UUCGGGGGCC- -5'
2208 3' -58.2 NC_001403.1 + 1196 1.09 0.000012
Target:  5'- cAGCGAUCGGAGAUCGCAAGCCCCCGGc -3'
miRNA:   3'- -UCGCUAGCCUCUAGCGUUCGGGGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.