miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22080 5' -51.9 NC_004927.1 + 50626 0.66 0.938118
Target:  5'- aUCUUGGUGGAGguaAUGGCUcuGAUGGa -3'
miRNA:   3'- gAGAGCCGUCUUg--UAUCGGcuCUACC- -5'
22080 5' -51.9 NC_004927.1 + 32105 0.66 0.927286
Target:  5'- -cCUCGGCAgGGACGUAGaaGuAGgcGGg -3'
miRNA:   3'- gaGAGCCGU-CUUGUAUCggC-UCuaCC- -5'
22080 5' -51.9 NC_004927.1 + 13408 0.66 0.921456
Target:  5'- gUCcCGGCGGAACA--GCCGAGu--- -3'
miRNA:   3'- gAGaGCCGUCUUGUauCGGCUCuacc -5'
22080 5' -51.9 NC_004927.1 + 52066 0.68 0.848527
Target:  5'- gCUCUCGGUAcGACGUGuuccCCGAGGUcGGc -3'
miRNA:   3'- -GAGAGCCGUcUUGUAUc---GGCUCUA-CC- -5'
22080 5' -51.9 NC_004927.1 + 63244 0.68 0.839878
Target:  5'- -aUUCGGCAGAACGUu-CCGAcuUGGg -3'
miRNA:   3'- gaGAGCCGUCUUGUAucGGCUcuACC- -5'
22080 5' -51.9 NC_004927.1 + 12753 0.69 0.821938
Target:  5'- -aCUCGGCAGAAaacuGCCGGGcgaGGu -3'
miRNA:   3'- gaGAGCCGUCUUguauCGGCUCua-CC- -5'
22080 5' -51.9 NC_004927.1 + 71750 0.69 0.812665
Target:  5'- --gUCGGCAGAACccGGCgGcGGUGGc -3'
miRNA:   3'- gagAGCCGUCUUGuaUCGgCuCUACC- -5'
22080 5' -51.9 NC_004927.1 + 38664 0.69 0.811728
Target:  5'- -cCUCGGCAGAGCAggguuccGUcuuccauguucauCGGGAUGGu -3'
miRNA:   3'- gaGAGCCGUCUUGUau-----CG-------------GCUCUACC- -5'
22080 5' -51.9 NC_004927.1 + 59499 0.7 0.773791
Target:  5'- uUCcagCGGCAGAuauuCGaGGCCGAGAaGGu -3'
miRNA:   3'- gAGa--GCCGUCUu---GUaUCGGCUCUaCC- -5'
22080 5' -51.9 NC_004927.1 + 50158 0.73 0.613138
Target:  5'- ---aCGGCGGAG-AUGGCgGAGAUGGu -3'
miRNA:   3'- gagaGCCGUCUUgUAUCGgCUCUACC- -5'
22080 5' -51.9 NC_004927.1 + 54000 1.11 0.002347
Target:  5'- uCUCUCGGCAGAACAUAGCCGAGAUGGa -3'
miRNA:   3'- -GAGAGCCGUCUUGUAUCGGCUCUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.