Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22080 | 5' | -51.9 | NC_004927.1 | + | 50626 | 0.66 | 0.938118 |
Target: 5'- aUCUUGGUGGAGguaAUGGCUcuGAUGGa -3' miRNA: 3'- gAGAGCCGUCUUg--UAUCGGcuCUACC- -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 32105 | 0.66 | 0.927286 |
Target: 5'- -cCUCGGCAgGGACGUAGaaGuAGgcGGg -3' miRNA: 3'- gaGAGCCGU-CUUGUAUCggC-UCuaCC- -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 13408 | 0.66 | 0.921456 |
Target: 5'- gUCcCGGCGGAACA--GCCGAGu--- -3' miRNA: 3'- gAGaGCCGUCUUGUauCGGCUCuacc -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 52066 | 0.68 | 0.848527 |
Target: 5'- gCUCUCGGUAcGACGUGuuccCCGAGGUcGGc -3' miRNA: 3'- -GAGAGCCGUcUUGUAUc---GGCUCUA-CC- -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 63244 | 0.68 | 0.839878 |
Target: 5'- -aUUCGGCAGAACGUu-CCGAcuUGGg -3' miRNA: 3'- gaGAGCCGUCUUGUAucGGCUcuACC- -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 12753 | 0.69 | 0.821938 |
Target: 5'- -aCUCGGCAGAAaacuGCCGGGcgaGGu -3' miRNA: 3'- gaGAGCCGUCUUguauCGGCUCua-CC- -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 71750 | 0.69 | 0.812665 |
Target: 5'- --gUCGGCAGAACccGGCgGcGGUGGc -3' miRNA: 3'- gagAGCCGUCUUGuaUCGgCuCUACC- -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 38664 | 0.69 | 0.811728 |
Target: 5'- -cCUCGGCAGAGCAggguuccGUcuuccauguucauCGGGAUGGu -3' miRNA: 3'- gaGAGCCGUCUUGUau-----CG-------------GCUCUACC- -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 59499 | 0.7 | 0.773791 |
Target: 5'- uUCcagCGGCAGAuauuCGaGGCCGAGAaGGu -3' miRNA: 3'- gAGa--GCCGUCUu---GUaUCGGCUCUaCC- -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 50158 | 0.73 | 0.613138 |
Target: 5'- ---aCGGCGGAG-AUGGCgGAGAUGGu -3' miRNA: 3'- gagaGCCGUCUUgUAUCGgCUCUACC- -5' |
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22080 | 5' | -51.9 | NC_004927.1 | + | 54000 | 1.11 | 0.002347 |
Target: 5'- uCUCUCGGCAGAACAUAGCCGAGAUGGa -3' miRNA: 3'- -GAGAGCCGUCUUGUAUCGGCUCUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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