miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22084 5' -52.6 NC_004927.1 + 60829 1.09 0.00275
Target:  5'- cUCAACACGCUCAAGCGGUCGAACGCUa -3'
miRNA:   3'- -AGUUGUGCGAGUUCGCCAGCUUGCGA- -5'
22084 5' -52.6 NC_004927.1 + 4805 0.72 0.600878
Target:  5'- aCAGCACGUUCAgAGCaucuuccagcucucGGUCGAACaGCg -3'
miRNA:   3'- aGUUGUGCGAGU-UCG--------------CCAGCUUG-CGa -5'
22084 5' -52.6 NC_004927.1 + 51814 0.72 0.626089
Target:  5'- gCuuCAgGUUCAGGCGGUCGGugaGCGUg -3'
miRNA:   3'- aGuuGUgCGAGUUCGCCAGCU---UGCGa -5'
22084 5' -52.6 NC_004927.1 + 29752 0.7 0.734402
Target:  5'- cCAGCuuuuCGCugacccauUCGAG-GGUCGAACGCUu -3'
miRNA:   3'- aGUUGu---GCG--------AGUUCgCCAGCUUGCGA- -5'
22084 5' -52.6 NC_004927.1 + 55070 0.68 0.832492
Target:  5'- uUCGAUAC-CUCGGGUGGUUcAGCGUg -3'
miRNA:   3'- -AGUUGUGcGAGUUCGCCAGcUUGCGa -5'
22084 5' -52.6 NC_004927.1 + 61430 0.68 0.841316
Target:  5'- aCGugACGgcgaaUCAGGCaauGGUCGAugGCg -3'
miRNA:   3'- aGUugUGCg----AGUUCG---CCAGCUugCGa -5'
22084 5' -52.6 NC_004927.1 + 65600 0.67 0.881995
Target:  5'- cUCGACGCugguGUUCcAGCGG-CGAaauACGCUg -3'
miRNA:   3'- -AGUUGUG----CGAGuUCGCCaGCU---UGCGA- -5'
22084 5' -52.6 NC_004927.1 + 30923 0.67 0.881995
Target:  5'- aUCGA-ACGCUCGAuGCGGUCGua-GUa -3'
miRNA:   3'- -AGUUgUGCGAGUU-CGCCAGCuugCGa -5'
22084 5' -52.6 NC_004927.1 + 60377 0.66 0.889391
Target:  5'- cUCGAUgAUGUUCAAG-GG-CGAGCGCg -3'
miRNA:   3'- -AGUUG-UGCGAGUUCgCCaGCUUGCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.