miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22085 3' -52 NC_004927.1 + 19395 0.66 0.949184
Target:  5'- aCCaCGCGcCUUC----UCGAUuuGGGCa -3'
miRNA:   3'- -GG-GCGCuGAAGuuuuAGCUGggCCUG- -5'
22085 3' -52 NC_004927.1 + 63636 0.66 0.939712
Target:  5'- aCCGUGACg--GGAA-CGGCCCGGu- -3'
miRNA:   3'- gGGCGCUGaagUUUUaGCUGGGCCug -5'
22085 3' -52 NC_004927.1 + 63720 0.66 0.929172
Target:  5'- cCCCG-GACUcggagauuccUgAGAGUCuGACCaCGGACu -3'
miRNA:   3'- -GGGCgCUGA----------AgUUUUAG-CUGG-GCCUG- -5'
22085 3' -52 NC_004927.1 + 45548 0.66 0.929172
Target:  5'- uCCCGCGACcagCAGGuucucaCGACUCguguGGACa -3'
miRNA:   3'- -GGGCGCUGaa-GUUUua----GCUGGG----CCUG- -5'
22085 3' -52 NC_004927.1 + 51368 0.67 0.898123
Target:  5'- aCgGCGAaacagUCGuuAAGUucccCGACCCGGACg -3'
miRNA:   3'- gGgCGCUga---AGU--UUUA----GCUGGGCCUG- -5'
22085 3' -52 NC_004927.1 + 53870 0.67 0.898123
Target:  5'- aCCGCcccaaucGCUUCG--GUCGaACCCGGAg -3'
miRNA:   3'- gGGCGc------UGAAGUuuUAGC-UGGGCCUg -5'
22085 3' -52 NC_004927.1 + 16663 0.67 0.898123
Target:  5'- aCCUGCGACUUguucacCGAAAUCGcugacaACCuCGGGu -3'
miRNA:   3'- -GGGCGCUGAA------GUUUUAGC------UGG-GCCUg -5'
22085 3' -52 NC_004927.1 + 47380 0.68 0.89112
Target:  5'- cUCUGCGugUUUcguAAUCGAacCCCGcGACg -3'
miRNA:   3'- -GGGCGCugAAGuu-UUAGCU--GGGC-CUG- -5'
22085 3' -52 NC_004927.1 + 66797 0.68 0.883861
Target:  5'- cCCCGCGAC--------CGAgCCGGGCg -3'
miRNA:   3'- -GGGCGCUGaaguuuuaGCUgGGCCUG- -5'
22085 3' -52 NC_004927.1 + 46423 0.69 0.843915
Target:  5'- gCCGUgGACUUCAA---CGAgCUGGACa -3'
miRNA:   3'- gGGCG-CUGAAGUUuuaGCUgGGCCUG- -5'
22085 3' -52 NC_004927.1 + 61206 0.69 0.843915
Target:  5'- gCCCGCGAC-UCGGAGggcuacUCGACgCUugGGGCc -3'
miRNA:   3'- -GGGCGCUGaAGUUUU------AGCUG-GG--CCUG- -5'
22085 3' -52 NC_004927.1 + 26137 0.69 0.826365
Target:  5'- gCCCGgcguaGGCaaugUCGAAGUCGugCUGGAg -3'
miRNA:   3'- -GGGCg----CUGa---AGUUUUAGCugGGCCUg -5'
22085 3' -52 NC_004927.1 + 68148 0.7 0.80802
Target:  5'- aCCGCGACggUGAAAcucUCGACCCcGAa -3'
miRNA:   3'- gGGCGCUGaaGUUUU---AGCUGGGcCUg -5'
22085 3' -52 NC_004927.1 + 16819 0.7 0.798573
Target:  5'- --aGCGACUUcCAGAAgaagaaGGCCCGGAg -3'
miRNA:   3'- gggCGCUGAA-GUUUUag----CUGGGCCUg -5'
22085 3' -52 NC_004927.1 + 47586 0.7 0.788956
Target:  5'- gCCCGCuACUUCcGAAaaGACUCGGAg -3'
miRNA:   3'- -GGGCGcUGAAGuUUUagCUGGGCCUg -5'
22085 3' -52 NC_004927.1 + 33170 0.7 0.759193
Target:  5'- uCCgGCGGgUUgGcgGUCGGCCCGG-Cg -3'
miRNA:   3'- -GGgCGCUgAAgUuuUAGCUGGGCCuG- -5'
22085 3' -52 NC_004927.1 + 22816 0.71 0.749004
Target:  5'- uCCgGCGGCUUCAGcucGAaCGACUCGGu- -3'
miRNA:   3'- -GGgCGCUGAAGUU---UUaGCUGGGCCug -5'
22085 3' -52 NC_004927.1 + 52254 0.72 0.696544
Target:  5'- cCUCGuUGACcuaaCGAAucucAUCGACCCGGACa -3'
miRNA:   3'- -GGGC-GCUGaa--GUUU----UAGCUGGGCCUG- -5'
22085 3' -52 NC_004927.1 + 61506 1.13 0.00196
Target:  5'- aCCCGCGACUUCAAAAUCGACCCGGACg -3'
miRNA:   3'- -GGGCGCUGAAGUUUUAGCUGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.