Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22085 | 3' | -52 | NC_004927.1 | + | 61506 | 1.13 | 0.00196 |
Target: 5'- aCCCGCGACUUCAAAAUCGACCCGGACg -3' miRNA: 3'- -GGGCGCUGAAGUUUUAGCUGGGCCUG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 52254 | 0.72 | 0.696544 |
Target: 5'- cCUCGuUGACcuaaCGAAucucAUCGACCCGGACa -3' miRNA: 3'- -GGGC-GCUGaa--GUUU----UAGCUGGGCCUG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 22816 | 0.71 | 0.749004 |
Target: 5'- uCCgGCGGCUUCAGcucGAaCGACUCGGu- -3' miRNA: 3'- -GGgCGCUGAAGUU---UUaGCUGGGCCug -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 33170 | 0.7 | 0.759193 |
Target: 5'- uCCgGCGGgUUgGcgGUCGGCCCGG-Cg -3' miRNA: 3'- -GGgCGCUgAAgUuuUAGCUGGGCCuG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 47586 | 0.7 | 0.788956 |
Target: 5'- gCCCGCuACUUCcGAAaaGACUCGGAg -3' miRNA: 3'- -GGGCGcUGAAGuUUUagCUGGGCCUg -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 16819 | 0.7 | 0.798573 |
Target: 5'- --aGCGACUUcCAGAAgaagaaGGCCCGGAg -3' miRNA: 3'- gggCGCUGAA-GUUUUag----CUGGGCCUg -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 68148 | 0.7 | 0.80802 |
Target: 5'- aCCGCGACggUGAAAcucUCGACCCcGAa -3' miRNA: 3'- gGGCGCUGaaGUUUU---AGCUGGGcCUg -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 26137 | 0.69 | 0.826365 |
Target: 5'- gCCCGgcguaGGCaaugUCGAAGUCGugCUGGAg -3' miRNA: 3'- -GGGCg----CUGa---AGUUUUAGCugGGCCUg -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 46423 | 0.69 | 0.843915 |
Target: 5'- gCCGUgGACUUCAA---CGAgCUGGACa -3' miRNA: 3'- gGGCG-CUGAAGUUuuaGCUgGGCCUG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 61206 | 0.69 | 0.843915 |
Target: 5'- gCCCGCGAC-UCGGAGggcuacUCGACgCUugGGGCc -3' miRNA: 3'- -GGGCGCUGaAGUUUU------AGCUG-GG--CCUG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 66797 | 0.68 | 0.883861 |
Target: 5'- cCCCGCGAC--------CGAgCCGGGCg -3' miRNA: 3'- -GGGCGCUGaaguuuuaGCUgGGCCUG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 47380 | 0.68 | 0.89112 |
Target: 5'- cUCUGCGugUUUcguAAUCGAacCCCGcGACg -3' miRNA: 3'- -GGGCGCugAAGuu-UUAGCU--GGGC-CUG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 51368 | 0.67 | 0.898123 |
Target: 5'- aCgGCGAaacagUCGuuAAGUucccCGACCCGGACg -3' miRNA: 3'- gGgCGCUga---AGU--UUUA----GCUGGGCCUG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 53870 | 0.67 | 0.898123 |
Target: 5'- aCCGCcccaaucGCUUCG--GUCGaACCCGGAg -3' miRNA: 3'- gGGCGc------UGAAGUuuUAGC-UGGGCCUg -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 16663 | 0.67 | 0.898123 |
Target: 5'- aCCUGCGACUUguucacCGAAAUCGcugacaACCuCGGGu -3' miRNA: 3'- -GGGCGCUGAA------GUUUUAGC------UGG-GCCUg -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 45548 | 0.66 | 0.929172 |
Target: 5'- uCCCGCGACcagCAGGuucucaCGACUCguguGGACa -3' miRNA: 3'- -GGGCGCUGaa-GUUUua----GCUGGG----CCUG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 63720 | 0.66 | 0.929172 |
Target: 5'- cCCCG-GACUcggagauuccUgAGAGUCuGACCaCGGACu -3' miRNA: 3'- -GGGCgCUGA----------AgUUUUAG-CUGG-GCCUG- -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 63636 | 0.66 | 0.939712 |
Target: 5'- aCCGUGACg--GGAA-CGGCCCGGu- -3' miRNA: 3'- gGGCGCUGaagUUUUaGCUGGGCCug -5' |
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22085 | 3' | -52 | NC_004927.1 | + | 19395 | 0.66 | 0.949184 |
Target: 5'- aCCaCGCGcCUUC----UCGAUuuGGGCa -3' miRNA: 3'- -GG-GCGCuGAAGuuuuAGCUGggCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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