miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22088 5' -56.1 NC_004927.1 + 29339 0.66 0.771516
Target:  5'- --gUCUCUCCGuCGugGUGGucgGGGCu- -3'
miRNA:   3'- auuGGAGAGGCuGCugCGCU---UCCGca -5'
22088 5' -56.1 NC_004927.1 + 29036 0.66 0.761621
Target:  5'- cGGCCUUgCgGAUGAUGUGucGGCGg -3'
miRNA:   3'- aUUGGAGaGgCUGCUGCGCuuCCGCa -5'
22088 5' -56.1 NC_004927.1 + 61040 0.66 0.761621
Target:  5'- -cGCUgg-CCGACGAgaGUGAAGGCGc -3'
miRNA:   3'- auUGGagaGGCUGCUg-CGCUUCCGCa -5'
22088 5' -56.1 NC_004927.1 + 61916 0.66 0.741461
Target:  5'- cGGCgCUCUCCGucacuuCGA-GUGggGGCGc -3'
miRNA:   3'- aUUG-GAGAGGCu-----GCUgCGCuuCCGCa -5'
22088 5' -56.1 NC_004927.1 + 61442 0.66 0.741461
Target:  5'- cGACCg--CCGACuACGUGAcGGCGa -3'
miRNA:   3'- aUUGGagaGGCUGcUGCGCUuCCGCa -5'
22088 5' -56.1 NC_004927.1 + 53577 0.66 0.731219
Target:  5'- cAACCUCccggccaacUCCGGCGAgcugguCGUGAccggGGGCGa -3'
miRNA:   3'- aUUGGAG---------AGGCUGCU------GCGCU----UCCGCa -5'
22088 5' -56.1 NC_004927.1 + 28817 0.68 0.614622
Target:  5'- -cGCCUCgaugCCGggaaccguuGCGGCGUGAagaaGGGCGUc -3'
miRNA:   3'- auUGGAGa---GGC---------UGCUGCGCU----UCCGCA- -5'
22088 5' -56.1 NC_004927.1 + 10399 0.68 0.603922
Target:  5'- aUGACCaacUC-CCGACGACGCcccacgguGGGGCGUu -3'
miRNA:   3'- -AUUGG---AGaGGCUGCUGCGc-------UUCCGCA- -5'
22088 5' -56.1 NC_004927.1 + 9068 0.69 0.593245
Target:  5'- aGAUUUCUUCGACgGACGggauggauuCGAGGGCGUc -3'
miRNA:   3'- aUUGGAGAGGCUG-CUGC---------GCUUCCGCA- -5'
22088 5' -56.1 NC_004927.1 + 53934 0.69 0.561433
Target:  5'- cGACC-CUCCGAuugaauacgucaCGACG-GAAGGCGc -3'
miRNA:   3'- aUUGGaGAGGCU------------GCUGCgCUUCCGCa -5'
22088 5' -56.1 NC_004927.1 + 46905 0.72 0.431257
Target:  5'- gUGACgC-CUuuGACGACgGCGAGGGCGc -3'
miRNA:   3'- -AUUG-GaGAggCUGCUG-CGCUUCCGCa -5'
22088 5' -56.1 NC_004927.1 + 66511 0.72 0.394823
Target:  5'- -uGCUUCUCUGaACGACGCuGAGGUGg -3'
miRNA:   3'- auUGGAGAGGC-UGCUGCGcUUCCGCa -5'
22088 5' -56.1 NC_004927.1 + 64589 1.06 0.00192
Target:  5'- aUAACCUCUCCGACGACGCGAAGGCGUa -3'
miRNA:   3'- -AUUGGAGAGGCUGCUGCGCUUCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.