miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22089 3' -51.7 NC_004927.1 + 16470 0.66 0.941992
Target:  5'- aACCGGAGacUACGccGUaGAGCAACCGg -3'
miRNA:   3'- -UGGCCUU--GUGCcuCGaUUUGUUGGCa -5'
22089 3' -51.7 NC_004927.1 + 44098 0.66 0.936894
Target:  5'- cCCGcGAACGCGGAGUcc-ACGACUu- -3'
miRNA:   3'- uGGC-CUUGUGCCUCGauuUGUUGGca -5'
22089 3' -51.7 NC_004927.1 + 415 0.66 0.919931
Target:  5'- aACCGGAGagACGGAcGggAAACgGGCCGUa -3'
miRNA:   3'- -UGGCCUUg-UGCCU-CgaUUUG-UUGGCA- -5'
22089 3' -51.7 NC_004927.1 + 46088 0.66 0.919931
Target:  5'- cGCCGcucGCACGGGGCUuGACcccgaggauugGGCCGg -3'
miRNA:   3'- -UGGCcu-UGUGCCUCGAuUUG-----------UUGGCa -5'
22089 3' -51.7 NC_004927.1 + 38180 0.67 0.886141
Target:  5'- uCCGaGAGC-CGGAG-UGAACGACCa- -3'
miRNA:   3'- uGGC-CUUGuGCCUCgAUUUGUUGGca -5'
22089 3' -51.7 NC_004927.1 + 54748 0.68 0.87858
Target:  5'- cCCGG--CGCGGGGac-AGCGACCGUg -3'
miRNA:   3'- uGGCCuuGUGCCUCgauUUGUUGGCA- -5'
22089 3' -51.7 NC_004927.1 + 22776 0.68 0.87858
Target:  5'- uACCGaGAGCGCGGGagUGAGUAGCCGa -3'
miRNA:   3'- -UGGC-CUUGUGCCUcgAUUUGUUGGCa -5'
22089 3' -51.7 NC_004927.1 + 897 0.69 0.828092
Target:  5'- gGCCGGAAC-CGGAGa-GAACuacCCGg -3'
miRNA:   3'- -UGGCCUUGuGCCUCgaUUUGuu-GGCa -5'
22089 3' -51.7 NC_004927.1 + 57823 0.69 0.828092
Target:  5'- gGCCGGAcucgcuucgaguGCGguUGGuGCUAuGGCGACCGUg -3'
miRNA:   3'- -UGGCCU------------UGU--GCCuCGAU-UUGUUGGCA- -5'
22089 3' -51.7 NC_004927.1 + 71954 0.7 0.73913
Target:  5'- -aUGGGGCGCGGAGCcgcuGACGACUa- -3'
miRNA:   3'- ugGCCUUGUGCCUCGau--UUGUUGGca -5'
22089 3' -51.7 NC_004927.1 + 36935 0.77 0.392693
Target:  5'- cACCGGAGacucaGCGG-GCUGuuCAGCCGUa -3'
miRNA:   3'- -UGGCCUUg----UGCCuCGAUuuGUUGGCA- -5'
22089 3' -51.7 NC_004927.1 + 66045 1.08 0.003953
Target:  5'- aACCGGAACACGGAGCUAAACAACCGUg -3'
miRNA:   3'- -UGGCCUUGUGCCUCGAUUUGUUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.