miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22093 5' -53.7 NC_004927.1 + 71738 0.7 0.681954
Target:  5'- cGGCGGCGG---UGGCUgaGCGAauCUCUCa -3'
miRNA:   3'- -CCGCCGCUaauGCUGA--CGCU--GAGAGc -5'
22093 5' -53.7 NC_004927.1 + 69480 1.1 0.002076
Target:  5'- gGGCGGCGAUUACGACUGCGACUCUCGc -3'
miRNA:   3'- -CCGCCGCUAAUGCUGACGCUGAGAGC- -5'
22093 5' -53.7 NC_004927.1 + 67797 0.67 0.830652
Target:  5'- cGGCGGCGugacGCaGACUGCucC-CUCGg -3'
miRNA:   3'- -CCGCCGCuaa-UG-CUGACGcuGaGAGC- -5'
22093 5' -53.7 NC_004927.1 + 64774 0.66 0.893915
Target:  5'- cGGUGGCGAUU-CGA--GCG-UUCUCa -3'
miRNA:   3'- -CCGCCGCUAAuGCUgaCGCuGAGAGc -5'
22093 5' -53.7 NC_004927.1 + 60783 0.68 0.784412
Target:  5'- cGGUGucccgaguCGAUgcgACGACUGCGGCUgUUGa -3'
miRNA:   3'- -CCGCc-------GCUAa--UGCUGACGCUGAgAGC- -5'
22093 5' -53.7 NC_004927.1 + 59371 0.76 0.379184
Target:  5'- cGGCGGCGGUaAUGGuCgGCG-CUCUCGg -3'
miRNA:   3'- -CCGCCGCUAaUGCU-GaCGCuGAGAGC- -5'
22093 5' -53.7 NC_004927.1 + 50751 0.7 0.713646
Target:  5'- uGGCGGUGAUggugGCGAUgcugGCGGUUCUa- -3'
miRNA:   3'- -CCGCCGCUAa---UGCUGa---CGCUGAGAgc -5'
22093 5' -53.7 NC_004927.1 + 34514 0.74 0.462131
Target:  5'- cGCGGCGAgucCGGuCUGCGACUgUCc -3'
miRNA:   3'- cCGCCGCUaauGCU-GACGCUGAgAGc -5'
22093 5' -53.7 NC_004927.1 + 10646 0.69 0.734408
Target:  5'- cGGuCGGCccgucGAUUACGACguucgUGUGACcCUCGa -3'
miRNA:   3'- -CC-GCCG-----CUAAUGCUG-----ACGCUGaGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.