miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22094 5' -45.8 NC_004927.1 + 20326 0.66 0.999208
Target:  5'- aCAgcGGCGGCccCAccggaggGAGCGUCGUCGu- -3'
miRNA:   3'- aGU--UCGCCGaaGU-------UUUGUAGCAGUuc -5'
22094 5' -45.8 NC_004927.1 + 22817 0.66 0.998641
Target:  5'- gUCcGGCGGCUUCAgcucGAACGacucgguuugaccgcUCGUacCGAGa -3'
miRNA:   3'- -AGuUCGCCGAAGU----UUUGU---------------AGCA--GUUC- -5'
22094 5' -45.8 NC_004927.1 + 28667 0.67 0.99812
Target:  5'- gUCAAcCGGCUUCGAGucuucgggcuuugacGCAUCGagucguugugccgcgUCAAGa -3'
miRNA:   3'- -AGUUcGCCGAAGUUU---------------UGUAGC---------------AGUUC- -5'
22094 5' -45.8 NC_004927.1 + 21610 0.67 0.997803
Target:  5'- aCAcGGCGGcCUUCGAG--GUCGUCAc- -3'
miRNA:   3'- aGU-UCGCC-GAAGUUUugUAGCAGUuc -5'
22094 5' -45.8 NC_004927.1 + 34340 0.67 0.997803
Target:  5'- aUCGAGCGuGuCUUCuccGAGCGUCGUg--- -3'
miRNA:   3'- -AGUUCGC-C-GAAGu--UUUGUAGCAguuc -5'
22094 5' -45.8 NC_004927.1 + 8212 0.67 0.996807
Target:  5'- -gGAGaGGCUUCGG---GUCGUCGGGg -3'
miRNA:   3'- agUUCgCCGAAGUUuugUAGCAGUUC- -5'
22094 5' -45.8 NC_004927.1 + 26882 0.68 0.992627
Target:  5'- aUCAGGC-GCUUCAGcuCGUCGUUc-- -3'
miRNA:   3'- -AGUUCGcCGAAGUUuuGUAGCAGuuc -5'
22094 5' -45.8 NC_004927.1 + 33625 0.69 0.990051
Target:  5'- --cAGCGGCggCAAuauCGUCGUCGu- -3'
miRNA:   3'- aguUCGCCGaaGUUuu-GUAGCAGUuc -5'
22094 5' -45.8 NC_004927.1 + 32574 0.7 0.974946
Target:  5'- cUCGGGUGGCUcaccgcaUCGAGGuCggCGUCGGGg -3'
miRNA:   3'- -AGUUCGCCGA-------AGUUUU-GuaGCAGUUC- -5'
22094 5' -45.8 NC_004927.1 + 70262 0.71 0.965439
Target:  5'- uUCGAGCauCUUCAGAACAgaaUCGUCAc- -3'
miRNA:   3'- -AGUUCGccGAAGUUUUGU---AGCAGUuc -5'
22094 5' -45.8 NC_004927.1 + 33772 0.71 0.965439
Target:  5'- --cGGCGGCUUCGAGGCAcucccgcugguUCaUCGAGc -3'
miRNA:   3'- aguUCGCCGAAGUUUUGU-----------AGcAGUUC- -5'
22094 5' -45.8 NC_004927.1 + 34846 0.84 0.389255
Target:  5'- gCGAGCGGCcaUCAcggGAACGUCGUCGGGg -3'
miRNA:   3'- aGUUCGCCGa-AGU---UUUGUAGCAGUUC- -5'
22094 5' -45.8 NC_004927.1 + 70148 1.11 0.010531
Target:  5'- aUCAAGCGGCUUCAAAACAUCGUCAAGu -3'
miRNA:   3'- -AGUUCGCCGAAGUUUUGUAGCAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.