miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22095 5' -55.3 NC_004927.1 + 33833 0.66 0.837723
Target:  5'- aUCCCGuacuCGGCGGCGAgGuCAACGu-- -3'
miRNA:   3'- cGGGGCu---GCUGCUGCUgC-GUUGCuaa -5'
22095 5' -55.3 NC_004927.1 + 65914 0.66 0.801964
Target:  5'- uCCCCGACcguguACGAC-ACGCAcguuGCGAUUu -3'
miRNA:   3'- cGGGGCUGc----UGCUGcUGCGU----UGCUAA- -5'
22095 5' -55.3 NC_004927.1 + 54750 0.66 0.801964
Target:  5'- aCCCCGGCG-CGGgGACaGCGACcGUg -3'
miRNA:   3'- cGGGGCUGCuGCUgCUG-CGUUGcUAa -5'
22095 5' -55.3 NC_004927.1 + 60780 0.66 0.792583
Target:  5'- uGUCCCGAguCGauGCGACGACuGCGGCuGUUg -3'
miRNA:   3'- -CGGGGCU--GC--UGCUGCUG-CGUUGcUAA- -5'
22095 5' -55.3 NC_004927.1 + 65506 0.66 0.792583
Target:  5'- aCCUCGGCGGCaACGAaaGCGACGGc- -3'
miRNA:   3'- cGGGGCUGCUGcUGCUg-CGUUGCUaa -5'
22095 5' -55.3 NC_004927.1 + 53203 0.67 0.763538
Target:  5'- uUCCCGGCGuCuACGACGUuACGAg- -3'
miRNA:   3'- cGGGGCUGCuGcUGCUGCGuUGCUaa -5'
22095 5' -55.3 NC_004927.1 + 55140 0.67 0.753589
Target:  5'- cGUCaaaGCGAcCGGCGACGUGACGAUUg -3'
miRNA:   3'- -CGGggcUGCU-GCUGCUGCGUUGCUAA- -5'
22095 5' -55.3 NC_004927.1 + 42324 0.67 0.743524
Target:  5'- aGCCCguUGGCGGCGACGGgGUAGgcauCGAg- -3'
miRNA:   3'- -CGGG--GCUGCUGCUGCUgCGUU----GCUaa -5'
22095 5' -55.3 NC_004927.1 + 67806 0.68 0.69182
Target:  5'- cGCUCCG--GGCGGCGGCGUGACGc-- -3'
miRNA:   3'- -CGGGGCugCUGCUGCUGCGUUGCuaa -5'
22095 5' -55.3 NC_004927.1 + 67861 0.69 0.670688
Target:  5'- aCCUCGAaGACGAgGACGaGACGGUUg -3'
miRNA:   3'- cGGGGCUgCUGCUgCUGCgUUGCUAA- -5'
22095 5' -55.3 NC_004927.1 + 45508 0.69 0.670688
Target:  5'- aUCUgGACGACGaggGCGAcCGCGACGAc- -3'
miRNA:   3'- cGGGgCUGCUGC---UGCU-GCGUUGCUaa -5'
22095 5' -55.3 NC_004927.1 + 46901 0.69 0.670688
Target:  5'- cGCCUuugaCGACGGCGAgGGCGCGGuCGu-- -3'
miRNA:   3'- -CGGG----GCUGCUGCUgCUGCGUU-GCuaa -5'
22095 5' -55.3 NC_004927.1 + 52846 0.69 0.660066
Target:  5'- aGCUCCGGCGGCGcuccggugaAgGACGCGACc--- -3'
miRNA:   3'- -CGGGGCUGCUGC---------UgCUGCGUUGcuaa -5'
22095 5' -55.3 NC_004927.1 + 73082 0.69 0.649419
Target:  5'- cUCCCGugGACGGCGAaGCcguCGGUc -3'
miRNA:   3'- cGGGGCugCUGCUGCUgCGuu-GCUAa -5'
22095 5' -55.3 NC_004927.1 + 73882 0.69 0.649419
Target:  5'- aCCCCGACGAUGAaauauuCGAUGaCGAUGGc- -3'
miRNA:   3'- cGGGGCUGCUGCU------GCUGC-GUUGCUaa -5'
22095 5' -55.3 NC_004927.1 + 45656 0.69 0.638757
Target:  5'- cUCCCGaACGAggcgacacaCGACGACGUGGCGGa- -3'
miRNA:   3'- cGGGGC-UGCU---------GCUGCUGCGUUGCUaa -5'
22095 5' -55.3 NC_004927.1 + 63874 0.69 0.628091
Target:  5'- cGCCCCGguuACGACGACucCGCuggUGAUUa -3'
miRNA:   3'- -CGGGGC---UGCUGCUGcuGCGuu-GCUAA- -5'
22095 5' -55.3 NC_004927.1 + 73237 0.69 0.616361
Target:  5'- aCCCCGcUGACGugGAaaaaaucgaaauuUGCGGCGAUa -3'
miRNA:   3'- cGGGGCuGCUGCugCU-------------GCGUUGCUAa -5'
22095 5' -55.3 NC_004927.1 + 71112 0.7 0.606775
Target:  5'- cUCCCGACGAgGGCGAgCGgAugGAc- -3'
miRNA:   3'- cGGGGCUGCUgCUGCU-GCgUugCUaa -5'
22095 5' -55.3 NC_004927.1 + 58610 0.7 0.596144
Target:  5'- cCCUCGAUGGCGAagugGugGCAACuGAUUg -3'
miRNA:   3'- cGGGGCUGCUGCUg---CugCGUUG-CUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.