miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22096 3' -54.3 NC_004927.1 + 64922 0.66 0.850848
Target:  5'- gAGGGGCAGagacggaCGGGCUUGaCGaggauacggcGUCGGCg -3'
miRNA:   3'- -UCCCCGUCa------GCUUGAGC-GCa---------UAGUCG- -5'
22096 3' -54.3 NC_004927.1 + 44069 0.67 0.805548
Target:  5'- gAGGGGCGaaucccgguucucGUCGAGCUUGU---UCAGa -3'
miRNA:   3'- -UCCCCGU-------------CAGCUUGAGCGcauAGUCg -5'
22096 3' -54.3 NC_004927.1 + 43978 0.67 0.794177
Target:  5'- uGGGGGUAGUCGAAUagucaauauagucgUCGCuGUAacCGGg -3'
miRNA:   3'- -UCCCCGUCAGCUUG--------------AGCG-CAUa-GUCg -5'
22096 3' -54.3 NC_004927.1 + 61894 0.67 0.787434
Target:  5'- uGGGGGCGcuccugccgacGUUGGACUCGuCGgacaGGCu -3'
miRNA:   3'- -UCCCCGU-----------CAGCUUGAGC-GCauagUCG- -5'
22096 3' -54.3 NC_004927.1 + 42098 0.67 0.77767
Target:  5'- -cGGGCGuuucGUCGGguucGCUCGCGUAgcuGGCu -3'
miRNA:   3'- ucCCCGU----CAGCU----UGAGCGCAUag-UCG- -5'
22096 3' -54.3 NC_004927.1 + 75529 0.67 0.767759
Target:  5'- uGGGGaGgGGUCGGcuACUCGUGgauuuucagAUUAGCu -3'
miRNA:   3'- -UCCC-CgUCAGCU--UGAGCGCa--------UAGUCG- -5'
22096 3' -54.3 NC_004927.1 + 60816 0.68 0.71745
Target:  5'- ---aGCGGUCGAACgcuaucguggacuacCGCGUGUCGGUg -3'
miRNA:   3'- ucccCGUCAGCUUGa--------------GCGCAUAGUCG- -5'
22096 3' -54.3 NC_004927.1 + 45440 0.69 0.684527
Target:  5'- aAGGcGGCGGUUcAGCUCG-GUAUCguuAGCg -3'
miRNA:   3'- -UCC-CCGUCAGcUUGAGCgCAUAG---UCG- -5'
22096 3' -54.3 NC_004927.1 + 65664 0.69 0.652218
Target:  5'- cGGGGCAGacacUCcGACUCGUuccaGUAUCAaGCu -3'
miRNA:   3'- uCCCCGUC----AGcUUGAGCG----CAUAGU-CG- -5'
22096 3' -54.3 NC_004927.1 + 65608 0.7 0.608932
Target:  5'- cAGGGGCGcUCGAcGCUgGUGUucCAGCg -3'
miRNA:   3'- -UCCCCGUcAGCU-UGAgCGCAuaGUCG- -5'
22096 3' -54.3 NC_004927.1 + 20127 0.72 0.513434
Target:  5'- cGGGGaGGUCGAACUC-CaaGUCAGCc -3'
miRNA:   3'- uCCCCgUCAGCUUGAGcGcaUAGUCG- -5'
22096 3' -54.3 NC_004927.1 + 72524 1.13 0.001077
Target:  5'- aAGGGGCAGUCGAACUCGCGUAUCAGCg -3'
miRNA:   3'- -UCCCCGUCAGCUUGAGCGCAUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.