miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22098 3' -47.5 NC_004927.1 + 50511 0.82 0.408454
Target:  5'- cGGAAACGGCGGAaaUUCGGUGA--AUGGa -3'
miRNA:   3'- -CUUUUGCCGCCU--AAGCCAUUcaUGCC- -5'
22098 3' -47.5 NC_004927.1 + 62899 0.73 0.889666
Target:  5'- uGAGAGC-GCGGGUUCGGUAcGUAUc- -3'
miRNA:   3'- -CUUUUGcCGCCUAAGCCAUuCAUGcc -5'
22098 3' -47.5 NC_004927.1 + 50154 0.72 0.896952
Target:  5'- cGGAGAUGGCGGAgaUGGUGGuGUACc- -3'
miRNA:   3'- -CUUUUGCCGCCUaaGCCAUU-CAUGcc -5'
22098 3' -47.5 NC_004927.1 + 73934 0.72 0.910689
Target:  5'- ---uGCGGCGGAggcuguucUCGGUGGGggagaaGCGGc -3'
miRNA:   3'- cuuuUGCCGCCUa-------AGCCAUUCa-----UGCC- -5'
22098 3' -47.5 NC_004927.1 + 57632 0.72 0.923289
Target:  5'- cGAAuuACGGCGGugcuggcUCGGguAGUACGGu -3'
miRNA:   3'- -CUUu-UGCCGCCua-----AGCCauUCAUGCC- -5'
22098 3' -47.5 NC_004927.1 + 58926 0.71 0.934738
Target:  5'- gGAAGGCGcG-GGAUUCGGcacGAGUGCGa -3'
miRNA:   3'- -CUUUUGC-CgCCUAAGCCa--UUCAUGCc -5'
22098 3' -47.5 NC_004927.1 + 65493 0.71 0.940032
Target:  5'- cGAAagcGACGGCGGGagUGGUGGGaACGa -3'
miRNA:   3'- -CUU---UUGCCGCCUaaGCCAUUCaUGCc -5'
22098 3' -47.5 NC_004927.1 + 26553 0.7 0.962294
Target:  5'- --uAGCGGCGGA---GGUGGGU-CGGc -3'
miRNA:   3'- cuuUUGCCGCCUaagCCAUUCAuGCC- -5'
22098 3' -47.5 NC_004927.1 + 45442 0.7 0.954216
Target:  5'- aGAAGGCGGCGGuucagcUCGGUAucGUuaGCGa -3'
miRNA:   3'- -CUUUUGCCGCCua----AGCCAUu-CA--UGCc -5'
22098 3' -47.5 NC_004927.1 + 50391 0.69 0.972465
Target:  5'- cGGGAGCGGUGGuggUGGUGcugGCGGu -3'
miRNA:   3'- -CUUUUGCCGCCuaaGCCAUucaUGCC- -5'
22098 3' -47.5 NC_004927.1 + 427 0.68 0.988299
Target:  5'- aGAGACGGaCGGAacCGGaGAG-ACGGa -3'
miRNA:   3'- cUUUUGCC-GCCUaaGCCaUUCaUGCC- -5'
22098 3' -47.5 NC_004927.1 + 50032 0.68 0.989806
Target:  5'- -uGGACGGUGGggUUGGUGguucaAGUaacucacgaGCGGg -3'
miRNA:   3'- cuUUUGCCGCCuaAGCCAU-----UCA---------UGCC- -5'
22098 3' -47.5 NC_004927.1 + 50328 0.68 0.989806
Target:  5'- uGGAGGCGGCGGAgcaGGUGgcAGUcuGCu- -3'
miRNA:   3'- -CUUUUGCCGCCUaagCCAU--UCA--UGcc -5'
22098 3' -47.5 NC_004927.1 + 455 0.66 0.995214
Target:  5'- aGAGACGGaCGGA--CGGgGAGagACGGg -3'
miRNA:   3'- cUUUUGCC-GCCUaaGCCaUUCa-UGCC- -5'
22098 3' -47.5 NC_004927.1 + 64659 0.66 0.996581
Target:  5'- ---uACGGCGcGAUgCGGgacagGAGUggcGCGGa -3'
miRNA:   3'- cuuuUGCCGC-CUAaGCCa----UUCA---UGCC- -5'
22098 3' -47.5 NC_004927.1 + 59371 0.66 0.996812
Target:  5'- --cGGCGGCGGuaauggUCGGcGcucucggagugagacAGUACGGu -3'
miRNA:   3'- cuuUUGCCGCCua----AGCCaU---------------UCAUGCC- -5'
22098 3' -47.5 NC_004927.1 + 46708 0.66 0.997609
Target:  5'- gGGGcgUGGCGGAa-CGGUGAGc-CGGg -3'
miRNA:   3'- -CUUuuGCCGCCUaaGCCAUUCauGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.