miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
221 5' -54.8 AC_000008.1 + 13985 0.66 0.602598
Target:  5'- -aCAGCAGcGUcCUGGAUUUGgGAGGGa -3'
miRNA:   3'- ccGUCGUC-CGcGAUCUGAACgUUCCU- -5'
221 5' -54.8 AC_000008.1 + 9285 0.66 0.595696
Target:  5'- aGCGGCGGGCGaaggAGAuguugcccccacaguCUUGCAAGc- -3'
miRNA:   3'- cCGUCGUCCGCga--UCU---------------GAACGUUCcu -5'
221 5' -54.8 AC_000008.1 + 8934 0.66 0.579642
Target:  5'- uGGCGGCgAGGuCGUUGGAaaUGCGGGc- -3'
miRNA:   3'- -CCGUCG-UCC-GCGAUCUgaACGUUCcu -5'
221 5' -54.8 AC_000008.1 + 17332 0.66 0.568231
Target:  5'- uGGCAGCacAGGUuucuGCUGGGUgucgGCGGGGGg -3'
miRNA:   3'- -CCGUCG--UCCG----CGAUCUGaa--CGUUCCU- -5'
221 5' -54.8 AC_000008.1 + 18459 0.66 0.545589
Target:  5'- cGGgGGUAGGCGCaaUGGAaggaUGUAGGGc -3'
miRNA:   3'- -CCgUCGUCCGCG--AUCUga--ACGUUCCu -5'
221 5' -54.8 AC_000008.1 + 9747 0.66 0.545589
Target:  5'- cGGCAGCGGGCGgCggucGGGgUUGUuucuggcgGAGGu -3'
miRNA:   3'- -CCGUCGUCCGC-Ga---UCUgAACG--------UUCCu -5'
221 5' -54.8 AC_000008.1 + 12810 0.67 0.523245
Target:  5'- gGGCAGCGcGCGCUgaaggagcAGuCUaGCAAGGc -3'
miRNA:   3'- -CCGUCGUcCGCGA--------UCuGAaCGUUCCu -5'
221 5' -54.8 AC_000008.1 + 8605 0.67 0.523245
Target:  5'- aGGUAGgGGGgGCUccGGACccGCcGGGAg -3'
miRNA:   3'- -CCGUCgUCCgCGA--UCUGaaCGuUCCU- -5'
221 5' -54.8 AC_000008.1 + 2163 0.67 0.501261
Target:  5'- aGCAGCAGGaggaaGCcAGGCggcgGCGgcAGGAg -3'
miRNA:   3'- cCGUCGUCCg----CGaUCUGaa--CGU--UCCU- -5'
221 5' -54.8 AC_000008.1 + 18224 0.67 0.501261
Target:  5'- aGGCGGCAGGUGa-GGGCcauaucUGCAAGa- -3'
miRNA:   3'- -CCGUCGUCCGCgaUCUGa-----ACGUUCcu -5'
221 5' -54.8 AC_000008.1 + 5252 0.67 0.490422
Target:  5'- cGGCAGUAgucGGUGCUcguccAGACggGCcAGGGu -3'
miRNA:   3'- -CCGUCGU---CCGCGA-----UCUGaaCGuUCCU- -5'
221 5' -54.8 AC_000008.1 + 11777 0.68 0.469081
Target:  5'- aGGUGGUAGGCGCguuGGCg-GCAucgguGGAg -3'
miRNA:   3'- -CCGUCGUCCGCGau-CUGaaCGUu----CCU- -5'
221 5' -54.8 AC_000008.1 + 22144 0.68 0.437991
Target:  5'- -cCAGCAGGCGC-GGGCggguggUGCGAGu- -3'
miRNA:   3'- ccGUCGUCCGCGaUCUGa-----ACGUUCcu -5'
221 5' -54.8 AC_000008.1 + 8473 0.68 0.437991
Target:  5'- uGGUGGC-GGCGUcgauGGCUUGCAAGaGGc -3'
miRNA:   3'- -CCGUCGuCCGCGau--CUGAACGUUC-CU- -5'
221 5' -54.8 AC_000008.1 + 17409 0.7 0.335001
Target:  5'- cGGUAGCcauGGGCGCgaugGGACgggUGguGGGc -3'
miRNA:   3'- -CCGUCG---UCCGCGa---UCUGa--ACguUCCu -5'
221 5' -54.8 AC_000008.1 + 17140 0.71 0.318284
Target:  5'- aGCAGguGGCGCcgGGACUgggcgUGCAGaccguGGAc -3'
miRNA:   3'- cCGUCguCCGCGa-UCUGA-----ACGUU-----CCU- -5'
221 5' -54.8 AC_000008.1 + 6580 0.71 0.302202
Target:  5'- gGGCAGCAGGCGCgcgucgaagUAGucuauCUUGCAu--- -3'
miRNA:   3'- -CCGUCGUCCGCG---------AUCu----GAACGUuccu -5'
221 5' -54.8 AC_000008.1 + 17274 0.73 0.218765
Target:  5'- uGGCGGCGcGGCGCagGGACgcgcgGCuAGGAc -3'
miRNA:   3'- -CCGUCGU-CCGCGa-UCUGaa---CGuUCCU- -5'
221 5' -54.8 AC_000008.1 + 23707 0.73 0.218765
Target:  5'- uGGUgauGGCGGGCGCUcGGGCUUGgGAGa- -3'
miRNA:   3'- -CCG---UCGUCCGCGA-UCUGAACgUUCcu -5'
221 5' -54.8 AC_000008.1 + 8532 0.77 0.116397
Target:  5'- cGCGGCGGGCGgUGGGCc-GCGGGGGu -3'
miRNA:   3'- cCGUCGUCCGCgAUCUGaaCGUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.