miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22102 5' -53.8 NC_004927.1 + 30695 0.66 0.876108
Target:  5'- -uGAGCcGGGaGUCCGaCUCGGAACCg -3'
miRNA:   3'- ccUUCGuUUC-CGGGCgGAGCUUUGGg -5'
22102 5' -53.8 NC_004927.1 + 74072 0.66 0.852211
Target:  5'- cGGucuGAGCGAAGaccUCCGCCUCaagcaGAAGCUCa -3'
miRNA:   3'- -CC---UUCGUUUCc--GGGCGGAG-----CUUUGGG- -5'
22102 5' -53.8 NC_004927.1 + 57334 0.66 0.852211
Target:  5'- cGAAGUAAAucGGCCUGCUcuuuUCGAGuucGCgCCg -3'
miRNA:   3'- cCUUCGUUU--CCGGGCGG----AGCUU---UG-GG- -5'
22102 5' -53.8 NC_004927.1 + 5520 0.67 0.84379
Target:  5'- cGGAGCGGGGGUaucCCUCGguAUCCa -3'
miRNA:   3'- cCUUCGUUUCCGggcGGAGCuuUGGG- -5'
22102 5' -53.8 NC_004927.1 + 54037 0.67 0.826312
Target:  5'- aGAcAGCcugcGGCCCGCuCUCGggGCg- -3'
miRNA:   3'- cCU-UCGuuu-CCGGGCG-GAGCuuUGgg -5'
22102 5' -53.8 NC_004927.1 + 50319 0.67 0.808045
Target:  5'- cGGAGCAGGuGGCaguCUGCuCUCGAAAUCg -3'
miRNA:   3'- cCUUCGUUU-CCG---GGCG-GAGCUUUGGg -5'
22102 5' -53.8 NC_004927.1 + 67549 0.68 0.798639
Target:  5'- cGAGGCuGAGcGCCCGUUcCGcGACCUg -3'
miRNA:   3'- cCUUCGuUUC-CGGGCGGaGCuUUGGG- -5'
22102 5' -53.8 NC_004927.1 + 50802 0.68 0.789065
Target:  5'- uGAAGUcaucAAcGGCCCGCCgggUGggGCUg -3'
miRNA:   3'- cCUUCG----UUuCCGGGCGGa--GCuuUGGg -5'
22102 5' -53.8 NC_004927.1 + 59853 0.68 0.789065
Target:  5'- aGGAAGCGAAGGaaCGCaUCGAGgaggaaagagagGCCg -3'
miRNA:   3'- -CCUUCGUUUCCggGCGgAGCUU------------UGGg -5'
22102 5' -53.8 NC_004927.1 + 32541 0.68 0.779333
Target:  5'- gGGAAGCGuuccccAAGGCCgUGaCCgUCGAggucgaugaAGCCCa -3'
miRNA:   3'- -CCUUCGU------UUCCGG-GC-GG-AGCU---------UUGGG- -5'
22102 5' -53.8 NC_004927.1 + 321 0.68 0.759437
Target:  5'- aGGggGCGGGgggagagacGGCCCGCg-CGggGCa- -3'
miRNA:   3'- -CCuuCGUUU---------CCGGGCGgaGCuuUGgg -5'
22102 5' -53.8 NC_004927.1 + 75838 0.68 0.759437
Target:  5'- aGGggGCGGGgggagagacGGCCCGCg-CGggGCa- -3'
miRNA:   3'- -CCuuCGUUU---------CCGGGCGgaGCuuUGgg -5'
22102 5' -53.8 NC_004927.1 + 30666 0.68 0.749295
Target:  5'- gGGAAcGCGGucGGGCUugaCGCCcuUCGGAACCa -3'
miRNA:   3'- -CCUU-CGUU--UCCGG---GCGG--AGCUUUGGg -5'
22102 5' -53.8 NC_004927.1 + 19800 0.7 0.674614
Target:  5'- gGGAAGCGAccggcGGGaaucgaaCCaCGCCUUGAcccuACCCa -3'
miRNA:   3'- -CCUUCGUU-----UCC-------GG-GCGGAGCUu---UGGG- -5'
22102 5' -53.8 NC_004927.1 + 57668 0.7 0.654141
Target:  5'- uGAAGCcgAAAGGCCCGCC----GACCa -3'
miRNA:   3'- cCUUCG--UUUCCGGGCGGagcuUUGGg -5'
22102 5' -53.8 NC_004927.1 + 63560 0.7 0.643332
Target:  5'- uGGuAGCGGugacAGGCUCGaCCUCG-AAUCCa -3'
miRNA:   3'- -CCuUCGUU----UCCGGGC-GGAGCuUUGGG- -5'
22102 5' -53.8 NC_004927.1 + 15064 0.72 0.536176
Target:  5'- cGGAGCGAA-GCCCGCCgCGAcuGCCg -3'
miRNA:   3'- cCUUCGUUUcCGGGCGGaGCUu-UGGg -5'
22102 5' -53.8 NC_004927.1 + 71836 0.73 0.505084
Target:  5'- -cGAGCAugAAGGCCCGCgUCGguAUCUc -3'
miRNA:   3'- ccUUCGU--UUCCGGGCGgAGCuuUGGG- -5'
22102 5' -53.8 NC_004927.1 + 70189 0.73 0.464899
Target:  5'- -cAGGCGAAGcaaCCGCCUCGAuGCCUg -3'
miRNA:   3'- ccUUCGUUUCcg-GGCGGAGCUuUGGG- -5'
22102 5' -53.8 NC_004927.1 + 69204 0.74 0.426442
Target:  5'- cGAAGCGAuggaacccGGCCCGCC-CGAAGaCCg -3'
miRNA:   3'- cCUUCGUUu-------CCGGGCGGaGCUUUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.