miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22105 3' -55.8 NC_004927.1 + 27406 0.66 0.802015
Target:  5'- --uCGAUACCAcgaACUuGCGACCGGaCGa -3'
miRNA:   3'- guuGCUGUGGU---UGGcUGCUGGCC-GCa -5'
22105 3' -55.8 NC_004927.1 + 37740 0.66 0.792674
Target:  5'- uCAGCGGCAUCGAgaacCCGACGauacacGCCGGg-- -3'
miRNA:   3'- -GUUGCUGUGGUU----GGCUGC------UGGCCgca -5'
22105 3' -55.8 NC_004927.1 + 10691 0.66 0.783179
Target:  5'- aAAUGAC-CCGACCGAgagugacguUGAUgGGCGa -3'
miRNA:   3'- gUUGCUGuGGUUGGCU---------GCUGgCCGCa -5'
22105 3' -55.8 NC_004927.1 + 29678 0.66 0.783179
Target:  5'- --uUGACAUgAACCGACGcggcuucgUCGGCGUa -3'
miRNA:   3'- guuGCUGUGgUUGGCUGCu-------GGCCGCA- -5'
22105 3' -55.8 NC_004927.1 + 37022 0.66 0.773537
Target:  5'- aGACGACACCAGCuucccgguCGAUGaAUCGGUc- -3'
miRNA:   3'- gUUGCUGUGGUUG--------GCUGC-UGGCCGca -5'
22105 3' -55.8 NC_004927.1 + 23034 0.67 0.743835
Target:  5'- aCGGgGAUGCCGGa-GACGuACCGGCGa -3'
miRNA:   3'- -GUUgCUGUGGUUggCUGC-UGGCCGCa -5'
22105 3' -55.8 NC_004927.1 + 49583 0.68 0.659692
Target:  5'- uGACGAaa-CGACUGACGACucuaccuCGGCGUa -3'
miRNA:   3'- gUUGCUgugGUUGGCUGCUG-------GCCGCA- -5'
22105 3' -55.8 NC_004927.1 + 17959 0.7 0.583375
Target:  5'- aGGCGACcCCGACCuaaugccguccacgGAaGACCGGCGa -3'
miRNA:   3'- gUUGCUGuGGUUGG--------------CUgCUGGCCGCa -5'
22105 3' -55.8 NC_004927.1 + 69828 0.7 0.576011
Target:  5'- gGugGGCGuCCGACUGACaccggGACUGGUGUa -3'
miRNA:   3'- gUugCUGU-GGUUGGCUG-----CUGGCCGCA- -5'
22105 3' -55.8 NC_004927.1 + 45646 0.7 0.555097
Target:  5'- aGGCGACACa---CGACGACgUGGCGg -3'
miRNA:   3'- gUUGCUGUGguugGCUGCUG-GCCGCa -5'
22105 3' -55.8 NC_004927.1 + 53778 0.72 0.464499
Target:  5'- gAGCGugACgAACCcgaguaacACGACCGGCGg -3'
miRNA:   3'- gUUGCugUGgUUGGc-------UGCUGGCCGCa -5'
22105 3' -55.8 NC_004927.1 + 14571 0.77 0.225211
Target:  5'- uCGugGGuCGCCAGCCGACGuucCCGGUGg -3'
miRNA:   3'- -GUugCU-GUGGUUGGCUGCu--GGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.