miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22105 5' -50.6 NC_004927.1 + 4622 0.66 0.972469
Target:  5'- cCGAAGCCuGCCg-GAGUcggUGGAGGUa- -3'
miRNA:   3'- -GCUUCGGcUGGagCUUA---ACUUCCAgc -5'
22105 5' -50.6 NC_004927.1 + 74450 0.66 0.969393
Target:  5'- cCGAguAGCCcGCCUCGA--UGAuGGUgGg -3'
miRNA:   3'- -GCU--UCGGcUGGAGCUuaACUuCCAgC- -5'
22105 5' -50.6 NC_004927.1 + 58769 0.66 0.969393
Target:  5'- uGggGCgGuguguCCUCGGAUagagauucGggGGUCGc -3'
miRNA:   3'- gCuuCGgCu----GGAGCUUAa-------CuuCCAGC- -5'
22105 5' -50.6 NC_004927.1 + 64732 0.66 0.966079
Target:  5'- -cGAGCCGGgUggcCGGAUUGAGGGaaUCGa -3'
miRNA:   3'- gcUUCGGCUgGa--GCUUAACUUCC--AGC- -5'
22105 5' -50.6 NC_004927.1 + 68124 0.66 0.962521
Target:  5'- cCGAAGCCGcucucCCUCugcUUGAGGGUg- -3'
miRNA:   3'- -GCUUCGGCu----GGAGcuuAACUUCCAgc -5'
22105 5' -50.6 NC_004927.1 + 67481 0.66 0.960265
Target:  5'- uCGAAGCUGACCccggCGAGUgggagaagcugagcGAGGG-CGa -3'
miRNA:   3'- -GCUUCGGCUGGa---GCUUAa-------------CUUCCaGC- -5'
22105 5' -50.6 NC_004927.1 + 42855 0.67 0.954222
Target:  5'- uCGAGGCCGACgaugUGGggUGucguacaGAGGUCGg -3'
miRNA:   3'- -GCUUCGGCUGga--GCUuaAC-------UUCCAGC- -5'
22105 5' -50.6 NC_004927.1 + 45867 0.67 0.953798
Target:  5'- gGAGGaaaaCGACCUCGAuguggacgccgUGAAGGagGa -3'
miRNA:   3'- gCUUCg---GCUGGAGCUua---------ACUUCCagC- -5'
22105 5' -50.6 NC_004927.1 + 58214 0.67 0.945714
Target:  5'- aCGAuGGgCGACCUCGA--UGAuauugccagucAGGUCa -3'
miRNA:   3'- -GCU-UCgGCUGGAGCUuaACU-----------UCCAGc -5'
22105 5' -50.6 NC_004927.1 + 68732 0.68 0.930283
Target:  5'- aCGAAGCCaacccCCUCGAugUGggGGaguccUCGg -3'
miRNA:   3'- -GCUUCGGcu---GGAGCUuaACuuCC-----AGC- -5'
22105 5' -50.6 NC_004927.1 + 52720 0.68 0.924589
Target:  5'- gCGAGGUugaaGACCUCugguuucaGGAUUGGAGGUUc -3'
miRNA:   3'- -GCUUCGg---CUGGAG--------CUUAACUUCCAGc -5'
22105 5' -50.6 NC_004927.1 + 4578 0.7 0.844294
Target:  5'- uCGAGGUCGGCUUCGcuu---AGGUCGa -3'
miRNA:   3'- -GCUUCGGCUGGAGCuuaacuUCCAGC- -5'
22105 5' -50.6 NC_004927.1 + 60569 0.73 0.717527
Target:  5'- uGAAGgCGACUUCGAGgauacugauuucgaGGAGGUCGa -3'
miRNA:   3'- gCUUCgGCUGGAGCUUaa------------CUUCCAGC- -5'
22105 5' -50.6 NC_004927.1 + 58890 0.74 0.640193
Target:  5'- gGGuaguGCCGACCUCGAcUUuGAGGUUGa -3'
miRNA:   3'- gCUu---CGGCUGGAGCUuAAcUUCCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.