miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22106 3' -58 NC_004927.1 + 29513 0.66 0.670154
Target:  5'- uCGGAugauuuccucGGGACGGuCGugGAACCAgCAg -3'
miRNA:   3'- uGCCUc---------CCCUGCU-GCugCUUGGUgGU- -5'
22106 3' -58 NC_004927.1 + 50245 0.66 0.658693
Target:  5'- cUGGAGGuggcggcGGugGugGugGAGCCgguggcuucaacGCCAu -3'
miRNA:   3'- uGCCUCC-------CCugCugCugCUUGG------------UGGU- -5'
22106 3' -58 NC_004927.1 + 243 0.67 0.649296
Target:  5'- gACGGgcAGGGGGCaGGgGACgGAACCAgCu -3'
miRNA:   3'- -UGCC--UCCCCUG-CUgCUG-CUUGGUgGu -5'
22106 3' -58 NC_004927.1 + 75760 0.67 0.649296
Target:  5'- gACGGgcAGGGGGCaGGgGACgGAACCAgCu -3'
miRNA:   3'- -UGCC--UCCCCUG-CUgCUG-CUUGGUgGu -5'
22106 3' -58 NC_004927.1 + 73790 0.67 0.606433
Target:  5'- gGCGGAGGaagaagcacacauGGACGuugaccuguACGACGAGCUGgCAu -3'
miRNA:   3'- -UGCCUCC-------------CCUGC---------UGCUGCUUGGUgGU- -5'
22106 3' -58 NC_004927.1 + 71668 0.68 0.555684
Target:  5'- gACGGgcgugggacAGGGGuuccACGACGAgGuucGCCGCCGa -3'
miRNA:   3'- -UGCC---------UCCCC----UGCUGCUgCu--UGGUGGU- -5'
22106 3' -58 NC_004927.1 + 73917 0.7 0.466368
Target:  5'- uCGGuGGGGgagaaGCGGCGAUGAGCCGa-- -3'
miRNA:   3'- uGCCuCCCC-----UGCUGCUGCUUGGUggu -5'
22106 3' -58 NC_004927.1 + 46193 0.71 0.376624
Target:  5'- cCGGAgGGGGACGugGGCcucUCACCGg -3'
miRNA:   3'- uGCCU-CCCCUGCugCUGcuuGGUGGU- -5'
22106 3' -58 NC_004927.1 + 40698 0.72 0.368309
Target:  5'- cGCGGgaacacagagugGGGGGAacgGACGAUGAACCaaACCGa -3'
miRNA:   3'- -UGCC------------UCCCCUg--CUGCUGCUUGG--UGGU- -5'
22106 3' -58 NC_004927.1 + 59030 0.73 0.29225
Target:  5'- -aGGAGGGGGCGAUuccgGugGAGaCACCGg -3'
miRNA:   3'- ugCCUCCCCUGCUG----CugCUUgGUGGU- -5'
22106 3' -58 NC_004927.1 + 57064 0.75 0.240681
Target:  5'- -gGGuGGGGACGuuGGCGAGCUAUCGg -3'
miRNA:   3'- ugCCuCCCCUGCugCUGCUUGGUGGU- -5'
22106 3' -58 NC_004927.1 + 19807 0.76 0.187133
Target:  5'- gACGGAGGGGAagcgacCGGCGGgaauCGAACCACg- -3'
miRNA:   3'- -UGCCUCCCCU------GCUGCU----GCUUGGUGgu -5'
22106 3' -58 NC_004927.1 + 52122 0.77 0.173244
Target:  5'- gACGcAGGGGACGACGugGuucaagaacagcAACCACCu -3'
miRNA:   3'- -UGCcUCCCCUGCUGCugC------------UUGGUGGu -5'
22106 3' -58 NC_004927.1 + 64280 0.77 0.164503
Target:  5'- uCGGAGuGGAcuaCGACGGCGAGCCGCUAc -3'
miRNA:   3'- uGCCUCcCCU---GCUGCUGCUUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.