Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22110 | 3' | -55.5 | NC_004927.1 | + | 75835 | 0.8 | 0.164595 |
Target: 5'- gGGCGGggGgagagACGGCCCGcGCGGGGCAg -3' miRNA: 3'- -CCGCCuaCa----UGCUGGGCcUGCCUUGU- -5' |
|||||||
22110 | 3' | -55.5 | NC_004927.1 | + | 318 | 0.8 | 0.164595 |
Target: 5'- gGGCGGggGgagagACGGCCCGcGCGGGGCAg -3' miRNA: 3'- -CCGCCuaCa----UGCUGGGCcUGCCUUGU- -5' |
|||||||
22110 | 3' | -55.5 | NC_004927.1 | + | 66491 | 0.69 | 0.647107 |
Target: 5'- aGGUGGAuUGguaugGCGACCCGGcucaGGAGgAa -3' miRNA: 3'- -CCGCCU-ACa----UGCUGGGCCug--CCUUgU- -5' |
|||||||
22110 | 3' | -55.5 | NC_004927.1 | + | 58961 | 0.68 | 0.730559 |
Target: 5'- cGCGGGgaugaGUAUGcgggaaauucuGCCCGGAUGGAAg- -3' miRNA: 3'- cCGCCUa----CAUGC-----------UGGGCCUGCCUUgu -5' |
|||||||
22110 | 3' | -55.5 | NC_004927.1 | + | 56209 | 0.67 | 0.740686 |
Target: 5'- cGUGGGUGgc---CCCGGACGGGAa- -3' miRNA: 3'- cCGCCUACaugcuGGGCCUGCCUUgu -5' |
|||||||
22110 | 3' | -55.5 | NC_004927.1 | + | 13182 | 0.66 | 0.807252 |
Target: 5'- --gGGAUGUucgggggACGGCCCGGACuuaaccaGAACGc -3' miRNA: 3'- ccgCCUACA-------UGCUGGGCCUGc------CUUGU- -5' |
|||||||
22110 | 3' | -55.5 | NC_004927.1 | + | 53298 | 0.66 | 0.826052 |
Target: 5'- uGGUGGAaa---GACCaCGGACGGAu-- -3' miRNA: 3'- -CCGCCUacaugCUGG-GCCUGCCUugu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home