miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22113 5' -54.1 NC_004927.1 + 58005 0.66 0.856425
Target:  5'- -gGCCCCGGUUauUGACGCgGugGUUUg -3'
miRNA:   3'- caCGGGGCUAAc-GCUGUG-CugCAAGu -5'
22113 5' -54.1 NC_004927.1 + 58566 0.7 0.659187
Target:  5'- -gGCCCUGAUUGCGuu-CGcUGUUCAg -3'
miRNA:   3'- caCGGGGCUAACGCuguGCuGCAAGU- -5'
22113 5' -54.1 NC_004927.1 + 60782 0.69 0.712734
Target:  5'- gGUGUCCCGAgu-CGAUGCGACGa--- -3'
miRNA:   3'- -CACGGGGCUaacGCUGUGCUGCaagu -5'
22113 5' -54.1 NC_004927.1 + 64779 0.69 0.691472
Target:  5'- -cGUCCCGGUgGCGAUuCGAgCGUUCu -3'
miRNA:   3'- caCGGGGCUAaCGCUGuGCU-GCAAGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.