Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22114 | 5' | -52.9 | NC_004927.1 | + | 16393 | 0.66 | 0.883201 |
Target: 5'- gGAAGGCGaAG-GGCGA-CUUCCUCa- -3' miRNA: 3'- -CUUCUGCcUCgCCGUUaGAAGGAGcu -5' |
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22114 | 5' | -52.9 | NC_004927.1 | + | 5522 | 0.66 | 0.875596 |
Target: 5'- ---uACGGAGCGGgGGUaucCCUCGGu -3' miRNA: 3'- cuucUGCCUCGCCgUUAgaaGGAGCU- -5' |
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22114 | 5' | -52.9 | NC_004927.1 | + | 60976 | 0.66 | 0.875596 |
Target: 5'- cGGAGAUGaGGCGGguAUCcgCUUCGGc -3' miRNA: 3'- -CUUCUGCcUCGCCguUAGaaGGAGCU- -5' |
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22114 | 5' | -52.9 | NC_004927.1 | + | 55850 | 0.67 | 0.862911 |
Target: 5'- gGAAGcaAUGGAGCGGgAAUCUugagguucugccgucUCaCUCGGg -3' miRNA: 3'- -CUUC--UGCCUCGCCgUUAGA---------------AG-GAGCU- -5' |
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22114 | 5' | -52.9 | NC_004927.1 | + | 54284 | 0.67 | 0.842745 |
Target: 5'- cGAAGACGGcucuuucGaCGGCGAUaCUgaggaggaaaUCCUCGAu -3' miRNA: 3'- -CUUCUGCCu------C-GCCGUUA-GA----------AGGAGCU- -5' |
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22114 | 5' | -52.9 | NC_004927.1 | + | 50328 | 0.75 | 0.428557 |
Target: 5'- uGGAGGCGGcggagcaGGUGGCAGUCUgcUCUCGAa -3' miRNA: 3'- -CUUCUGCC-------UCGCCGUUAGAa-GGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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