miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22117 3' -51.7 NC_004927.1 + 46906 0.66 0.959954
Target:  5'- -cGUGACGccuuUGACGACgGCGAggGCg -3'
miRNA:   3'- guCAUUGCu---GCUGCUGgCGCUgaUGg -5'
22117 3' -51.7 NC_004927.1 + 46472 0.66 0.956437
Target:  5'- ---cAGCGGCGACcuuucgacucgggaGGCCGUggagugguacuucgaGACUGCCg -3'
miRNA:   3'- gucaUUGCUGCUG--------------CUGGCG---------------CUGAUGG- -5'
22117 3' -51.7 NC_004927.1 + 67433 0.66 0.956034
Target:  5'- cCGG-AACGACccguGCGAaggaCGaCGACUACCu -3'
miRNA:   3'- -GUCaUUGCUGc---UGCUg---GC-GCUGAUGG- -5'
22117 3' -51.7 NC_004927.1 + 64333 0.66 0.953561
Target:  5'- gCAGUAuuuCGACGugGACauuccgaGCgguugggagcggcccGACUACUa -3'
miRNA:   3'- -GUCAUu--GCUGCugCUGg------CG---------------CUGAUGG- -5'
22117 3' -51.7 NC_004927.1 + 59817 0.66 0.951861
Target:  5'- cCGGUGACGACGAcuCGAUUGauAUUGCg -3'
miRNA:   3'- -GUCAUUGCUGCU--GCUGGCgcUGAUGg -5'
22117 3' -51.7 NC_004927.1 + 66747 0.66 0.951861
Target:  5'- uCGGUGucuCGAUGACGAacCCGCucGCcGCCg -3'
miRNA:   3'- -GUCAUu--GCUGCUGCU--GGCGc-UGaUGG- -5'
22117 3' -51.7 NC_004927.1 + 34520 0.66 0.946972
Target:  5'- gCAG-AACG-CGGCGAguccgguCUGCGACUGuCCc -3'
miRNA:   3'- -GUCaUUGCuGCUGCU-------GGCGCUGAU-GG- -5'
22117 3' -51.7 NC_004927.1 + 3595 0.66 0.942738
Target:  5'- uCGGgu-CGAUGACcACCGUGAUgagcugGCCg -3'
miRNA:   3'- -GUCauuGCUGCUGcUGGCGCUGa-----UGG- -5'
22117 3' -51.7 NC_004927.1 + 53763 0.67 0.932558
Target:  5'- gAGUAAC-ACGAcCGGCgGUGAgaACCg -3'
miRNA:   3'- gUCAUUGcUGCU-GCUGgCGCUgaUGG- -5'
22117 3' -51.7 NC_004927.1 + 64277 0.67 0.915284
Target:  5'- gAGUGgacuACGACGGCGAgCCGCuACgggaauccgACCu -3'
miRNA:   3'- gUCAU----UGCUGCUGCU-GGCGcUGa--------UGG- -5'
22117 3' -51.7 NC_004927.1 + 57886 0.68 0.908991
Target:  5'- -cGUGACGAUGGCGAagguUCGCG-UUGCg -3'
miRNA:   3'- guCAUUGCUGCUGCU----GGCGCuGAUGg -5'
22117 3' -51.7 NC_004927.1 + 52998 0.68 0.881212
Target:  5'- --aUGACGACGAUGAUgGCGggaauuggaaACUGCUc -3'
miRNA:   3'- gucAUUGCUGCUGCUGgCGC----------UGAUGG- -5'
22117 3' -51.7 NC_004927.1 + 61429 0.68 0.880466
Target:  5'- -cGUGACGGCGAaucaggcaaugguCGAUggCGCGGCUGgCg -3'
miRNA:   3'- guCAUUGCUGCU-------------GCUG--GCGCUGAUgG- -5'
22117 3' -51.7 NC_004927.1 + 67800 0.69 0.865816
Target:  5'- ---gGGCGGCGGCGugaCGCaGACUGCUc -3'
miRNA:   3'- gucaUUGCUGCUGCug-GCG-CUGAUGG- -5'
22117 3' -51.7 NC_004927.1 + 60032 0.69 0.849477
Target:  5'- aCAGUAACGACGuuaacaucuCGAagcuCCGCGAaCUGgCu -3'
miRNA:   3'- -GUCAUUGCUGCu--------GCU----GGCGCU-GAUgG- -5'
22117 3' -51.7 NC_004927.1 + 44956 0.69 0.840972
Target:  5'- gCAGUAACGGCGAacCGGCCaucgGACUucuCCu -3'
miRNA:   3'- -GUCAUUGCUGCU--GCUGGcg--CUGAu--GG- -5'
22117 3' -51.7 NC_004927.1 + 61471 0.71 0.773032
Target:  5'- gGGUAGCacgGGCGacucgguggacuacGCGACCGCcGACUACg -3'
miRNA:   3'- gUCAUUG---CUGC--------------UGCUGGCG-CUGAUGg -5'
22117 3' -51.7 NC_004927.1 + 15065 0.71 0.745786
Target:  5'- uCGG-AGCGAaGcCcGCCGCGACUGCCg -3'
miRNA:   3'- -GUCaUUGCUgCuGcUGGCGCUGAUGG- -5'
22117 3' -51.7 NC_004927.1 + 49506 0.72 0.725068
Target:  5'- gUAGUGACGACGAUuGGCaagaaggucuaCGCGGCUGgCu -3'
miRNA:   3'- -GUCAUUGCUGCUG-CUG-----------GCGCUGAUgG- -5'
22117 3' -51.7 NC_004927.1 + 63870 0.72 0.725068
Target:  5'- cCGGUuACGACGACu-CCGCugguGAUUACCu -3'
miRNA:   3'- -GUCAuUGCUGCUGcuGGCG----CUGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.