miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22120 5' -53.2 NC_004927.1 + 41816 0.66 0.904766
Target:  5'- uGCGGCGucacucuCGGUcGCauuuucgagagcaauUCCGACGAUUCu -3'
miRNA:   3'- cUGCUGCu------GCCAcUG---------------AGGCUGCUAAG- -5'
22120 5' -53.2 NC_004927.1 + 45345 0.66 0.902118
Target:  5'- gGACGAUugcGCGGUGugUcCCGAgugcUGGUUCu -3'
miRNA:   3'- -CUGCUGc--UGCCACugA-GGCU----GCUAAG- -5'
22120 5' -53.2 NC_004927.1 + 64157 0.66 0.902118
Target:  5'- aGACGAgCGACGGUGAg-CUGGuCGAa-- -3'
miRNA:   3'- -CUGCU-GCUGCCACUgaGGCU-GCUaag -5'
22120 5' -53.2 NC_004927.1 + 40182 0.68 0.84086
Target:  5'- aACGGCGACGaGcGAgacuacCUCCGACGAg-- -3'
miRNA:   3'- cUGCUGCUGC-CaCU------GAGGCUGCUaag -5'
22120 5' -53.2 NC_004927.1 + 50036 0.68 0.814216
Target:  5'- aACGugGACGGUGGggUUGGUGGUUCa -3'
miRNA:   3'- cUGCugCUGCCACUgaGGCUGCUAAG- -5'
22120 5' -53.2 NC_004927.1 + 45504 0.68 0.814216
Target:  5'- gGACGACGAgGGcGAC-CgCGACGAc-- -3'
miRNA:   3'- -CUGCUGCUgCCaCUGaG-GCUGCUaag -5'
22120 5' -53.2 NC_004927.1 + 72070 0.68 0.804954
Target:  5'- uGAUGGCGGCGGaGACUCa-GCGAg-- -3'
miRNA:   3'- -CUGCUGCUGCCaCUGAGgcUGCUaag -5'
22120 5' -53.2 NC_004927.1 + 71739 0.68 0.804954
Target:  5'- -cCGGCGGCGGUGGCUgaG-CGAaUCu -3'
miRNA:   3'- cuGCUGCUGCCACUGAggCuGCUaAG- -5'
22120 5' -53.2 NC_004927.1 + 65581 0.69 0.765274
Target:  5'- cGGCGAaauacgcUGACGGUGGC-CCucCGGUUCa -3'
miRNA:   3'- -CUGCU-------GCUGCCACUGaGGcuGCUAAG- -5'
22120 5' -53.2 NC_004927.1 + 52484 0.7 0.73583
Target:  5'- uACGAUGGCGGcuaugacgcucuUGACUCCGAgGGc-- -3'
miRNA:   3'- cUGCUGCUGCC------------ACUGAGGCUgCUaag -5'
22120 5' -53.2 NC_004927.1 + 54952 0.72 0.6079
Target:  5'- uGACGGCGAuacuCGGUGACUaucaaCGGCG-UUCc -3'
miRNA:   3'- -CUGCUGCU----GCCACUGAg----GCUGCuAAG- -5'
22120 5' -53.2 NC_004927.1 + 50751 0.78 0.314201
Target:  5'- uGGCGGUGAUGGUGGCgaugCUGGCGGUUCu -3'
miRNA:   3'- -CUGCUGCUGCCACUGa---GGCUGCUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.