miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22122 3' -57.6 NC_004927.1 + 70865 0.66 0.710957
Target:  5'- --aUCGAGCagacggagGAAGauauugCGCCGGuCGCCc -3'
miRNA:   3'- gcaAGCUCGa-------CUUCg-----GCGGCCuGCGG- -5'
22122 3' -57.6 NC_004927.1 + 32590 0.66 0.690341
Target:  5'- --aUCGAGUccGAGGUCGCUcgGGugGCUc -3'
miRNA:   3'- gcaAGCUCGa-CUUCGGCGG--CCugCGG- -5'
22122 3' -57.6 NC_004927.1 + 33721 0.66 0.690341
Target:  5'- aGUUCGAGUcGguGUCGCCauAUGCCa -3'
miRNA:   3'- gCAAGCUCGaCuuCGGCGGccUGCGG- -5'
22122 3' -57.6 NC_004927.1 + 33233 0.67 0.627569
Target:  5'- aCGUUCuccUUGAGGCCGuuGaACGCCg -3'
miRNA:   3'- -GCAAGcucGACUUCGGCggCcUGCGG- -5'
22122 3' -57.6 NC_004927.1 + 47531 0.67 0.617069
Target:  5'- uGUUcCGAcgagucGCUGAGaacGUCGCCGGA-GCCg -3'
miRNA:   3'- gCAA-GCU------CGACUU---CGGCGGCCUgCGG- -5'
22122 3' -57.6 NC_004927.1 + 23067 0.68 0.596112
Target:  5'- cCGUUCGGGCc---GUCGUCGGACGa- -3'
miRNA:   3'- -GCAAGCUCGacuuCGGCGGCCUGCgg -5'
22122 3' -57.6 NC_004927.1 + 42515 0.69 0.524013
Target:  5'- --cUCG-GCUGAaucGGUCGCgGGuCGCCg -3'
miRNA:   3'- gcaAGCuCGACU---UCGGCGgCCuGCGG- -5'
22122 3' -57.6 NC_004927.1 + 15068 0.75 0.257481
Target:  5'- uGUUCgGAGC-GAAGcCCGCCGcGACuGCCg -3'
miRNA:   3'- gCAAG-CUCGaCUUC-GGCGGC-CUG-CGG- -5'
22122 3' -57.6 NC_004927.1 + 20463 0.75 0.257481
Target:  5'- gGUUCGAgagucGCUucGAGGUCGCCGGAgGUCu -3'
miRNA:   3'- gCAAGCU-----CGA--CUUCGGCGGCCUgCGG- -5'
22122 3' -57.6 NC_004927.1 + 70657 0.77 0.190011
Target:  5'- aGUaCGcGCUGGAGCCGCCgggugguGGugGCCc -3'
miRNA:   3'- gCAaGCuCGACUUCGGCGG-------CCugCGG- -5'
22122 3' -57.6 NC_004927.1 + 21805 0.79 0.139314
Target:  5'- cCGagCGAgccGCUGGAGCCGCUGGAacCGCCc -3'
miRNA:   3'- -GCaaGCU---CGACUUCGGCGGCCU--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.