miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22125 3' -48.6 NC_004927.1 + 66608 0.66 0.989612
Target:  5'- cCGAAAUC-CGGGCGuucacCGGCAUCg -3'
miRNA:   3'- uGCUUUAGcGUCCGCcuua-GUUGUAG- -5'
22125 3' -48.6 NC_004927.1 + 43104 0.66 0.989612
Target:  5'- cACGggGa-GCGGGacaGGAAUCuucACAUCc -3'
miRNA:   3'- -UGCuuUagCGUCCg--CCUUAGu--UGUAG- -5'
22125 3' -48.6 NC_004927.1 + 45446 0.66 0.984441
Target:  5'- aGCGAGAagGC-GGCGGu-UCAGC-UCg -3'
miRNA:   3'- -UGCUUUagCGuCCGCCuuAGUUGuAG- -5'
22125 3' -48.6 NC_004927.1 + 46228 0.67 0.971779
Target:  5'- uACGAGGUCGC--GCGGugcGUCAugcgauACAUCg -3'
miRNA:   3'- -UGCUUUAGCGucCGCCu--UAGU------UGUAG- -5'
22125 3' -48.6 NC_004927.1 + 49426 0.67 0.968546
Target:  5'- uAUGGAAUCGgGaaguguGGCuGGAAUCAguACGUCg -3'
miRNA:   3'- -UGCUUUAGCgU------CCG-CCUUAGU--UGUAG- -5'
22125 3' -48.6 NC_004927.1 + 56191 0.68 0.961308
Target:  5'- -gGAAGUUGUGGGuCGGuAGUCGGCAg- -3'
miRNA:   3'- ugCUUUAGCGUCC-GCC-UUAGUUGUag -5'
22125 3' -48.6 NC_004927.1 + 30018 0.68 0.948412
Target:  5'- gACGAGAaCGCcGaGCGGAAUCAGgCAg- -3'
miRNA:   3'- -UGCUUUaGCGuC-CGCCUUAGUU-GUag -5'
22125 3' -48.6 NC_004927.1 + 43591 0.7 0.900603
Target:  5'- -aGAGGUCGUAguuccccguGGUGGAGUCAuacaguuguucgaGCAUCg -3'
miRNA:   3'- ugCUUUAGCGU---------CCGCCUUAGU-------------UGUAG- -5'
22125 3' -48.6 NC_004927.1 + 26562 0.71 0.854012
Target:  5'- cCGggGUgGUAgcGGCGGAgguggGUCGGCAUCc -3'
miRNA:   3'- uGCuuUAgCGU--CCGCCU-----UAGUUGUAG- -5'
22125 3' -48.6 NC_004927.1 + 24501 0.72 0.836185
Target:  5'- gACGAGAcgaGCgAGGuCGGAcgaGUCAACGUCa -3'
miRNA:   3'- -UGCUUUag-CG-UCC-GCCU---UAGUUGUAG- -5'
22125 3' -48.6 NC_004927.1 + 32583 0.75 0.678586
Target:  5'- cCGAGGUCGCucGGGUGGcucaccgcaucgaGGUCGGCGUCg -3'
miRNA:   3'- uGCUUUAGCG--UCCGCC-------------UUAGUUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.