miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22128 3' -53.2 NC_004927.1 + 5672 0.66 0.895918
Target:  5'- ----aGACCGuucCGGGCUUCACGu-- -3'
miRNA:   3'- cauugCUGGCcu-GCCCGAAGUGCuug -5'
22128 3' -53.2 NC_004927.1 + 52244 0.67 0.866023
Target:  5'- cUAACGAaucucaucgacCCGGACaacgauGGGCaggUCGCGGAUg -3'
miRNA:   3'- cAUUGCU-----------GGCCUG------CCCGa--AGUGCUUG- -5'
22128 3' -53.2 NC_004927.1 + 75859 0.67 0.857939
Target:  5'- -aGACGGCCcguauGGACGGGCa--GgGGGCg -3'
miRNA:   3'- caUUGCUGG-----CCUGCCCGaagUgCUUG- -5'
22128 3' -53.2 NC_004927.1 + 342 0.67 0.857939
Target:  5'- -aGACGGCCcguauGGACGGGCa--GgGGGCg -3'
miRNA:   3'- caUUGCUGG-----CCUGCCCGaagUgCUUG- -5'
22128 3' -53.2 NC_004927.1 + 30616 0.67 0.857939
Target:  5'- cGUGACGACgGaGACGGucuGCUUUAgCGAGa -3'
miRNA:   3'- -CAUUGCUGgC-CUGCC---CGAAGU-GCUUg -5'
22128 3' -53.2 NC_004927.1 + 66972 0.67 0.849624
Target:  5'- aUGGCGACCGGGauGcGCU-CGCaGGACg -3'
miRNA:   3'- cAUUGCUGGCCUgcC-CGAaGUG-CUUG- -5'
22128 3' -53.2 NC_004927.1 + 8162 0.67 0.841086
Target:  5'- -gGAUGaACCGGGucguCGGGCUUCAguCGggUu -3'
miRNA:   3'- caUUGC-UGGCCU----GCCCGAAGU--GCuuG- -5'
22128 3' -53.2 NC_004927.1 + 19797 0.68 0.81422
Target:  5'- -aAGCGACCGG-CGGGaau--CGAACc -3'
miRNA:   3'- caUUGCUGGCCuGCCCgaaguGCUUG- -5'
22128 3' -53.2 NC_004927.1 + 19465 0.68 0.794397
Target:  5'- uGUAGCGAauCUGGAugaguucCGGGUUgUUACGAACg -3'
miRNA:   3'- -CAUUGCU--GGCCU-------GCCCGA-AGUGCUUG- -5'
22128 3' -53.2 NC_004927.1 + 50037 0.69 0.749591
Target:  5'- -cAACGuggaCGGugGGGUUggugguucaaguaacUCACGAGCg -3'
miRNA:   3'- caUUGCug--GCCugCCCGA---------------AGUGCUUG- -5'
22128 3' -53.2 NC_004927.1 + 37695 0.69 0.735122
Target:  5'- cGUGACaGuCCGGcaugaacuucACGGGgUUCugGAACg -3'
miRNA:   3'- -CAUUG-CuGGCC----------UGCCCgAAGugCUUG- -5'
22128 3' -53.2 NC_004927.1 + 71644 0.69 0.721508
Target:  5'- -cGACGAgguucgccgccgaaUCGGGCGuGGCUaCACGGGCu -3'
miRNA:   3'- caUUGCU--------------GGCCUGC-CCGAaGUGCUUG- -5'
22128 3' -53.2 NC_004927.1 + 64919 0.71 0.616911
Target:  5'- -gGGCaGAgaCGGACGGGCUUgACGAGg -3'
miRNA:   3'- caUUG-CUg-GCCUGCCCGAAgUGCUUg -5'
22128 3' -53.2 NC_004927.1 + 71290 0.71 0.615824
Target:  5'- -cGACGGuuGGGCGGGCUugaagauuucuggUCAgucuuCGAGCg -3'
miRNA:   3'- caUUGCUggCCUGCCCGA-------------AGU-----GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.