miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22131 5' -53.5 NC_004927.1 + 50337 0.66 0.892256
Target:  5'- uGCAUCcgcugGAGGCGGcgGAgcAGGuGgcaGUCu -3'
miRNA:   3'- -CGUAG-----CUCCGCCuaCU--UCCuCag-CAG- -5'
22131 5' -53.5 NC_004927.1 + 6900 0.66 0.877578
Target:  5'- gGCAUCGAc-CGGA---AGGGGUUGUCg -3'
miRNA:   3'- -CGUAGCUccGCCUacuUCCUCAGCAG- -5'
22131 5' -53.5 NC_004927.1 + 42857 0.66 0.861914
Target:  5'- -uGUCGAGGCcgacGAUGuGGGGuGUCGUa -3'
miRNA:   3'- cgUAGCUCCGc---CUAC-UUCCuCAGCAg -5'
22131 5' -53.5 NC_004927.1 + 7207 0.67 0.853728
Target:  5'- gGC-UUGAGGUGGAacauaUGuccaccacGGGAGUCGUUc -3'
miRNA:   3'- -CGuAGCUCCGCCU-----ACu-------UCCUCAGCAG- -5'
22131 5' -53.5 NC_004927.1 + 30515 0.67 0.831409
Target:  5'- aCAUCGAGGUGGGUuguccacuucugcucGAaagAGaGGUCGUCc -3'
miRNA:   3'- cGUAGCUCCGCCUA---------------CU---UCcUCAGCAG- -5'
22131 5' -53.5 NC_004927.1 + 20338 0.68 0.800169
Target:  5'- uCAUCGAaggagacagcGGCGGccccaccgGAGGGAgcGUCGUCg -3'
miRNA:   3'- cGUAGCU----------CCGCCua------CUUCCU--CAGCAG- -5'
22131 5' -53.5 NC_004927.1 + 16346 0.68 0.773934
Target:  5'- cGCuUCGAGagggagcuggaacgaGCGGAUGAuuGGGAugcuccgaugccgGUCGUCg -3'
miRNA:   3'- -CGuAGCUC---------------CGCCUACU--UCCU-------------CAGCAG- -5'
22131 5' -53.5 NC_004927.1 + 8528 0.69 0.719615
Target:  5'- uCAUCGAGGUGGugcuUGA---GGUCGUCc -3'
miRNA:   3'- cGUAGCUCCGCCu---ACUuccUCAGCAG- -5'
22131 5' -53.5 NC_004927.1 + 49366 0.69 0.709051
Target:  5'- aGCAUCGAGGUGGA-GuuGGaAGaCGUUu -3'
miRNA:   3'- -CGUAGCUCCGCCUaCuuCC-UCaGCAG- -5'
22131 5' -53.5 NC_004927.1 + 75542 0.77 0.307934
Target:  5'- -aGUCGGGGuCGGAUGGggAGGGGUCGg- -3'
miRNA:   3'- cgUAGCUCC-GCCUACU--UCCUCAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.