miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22133 5' -54.3 NC_004927.1 + 16139 0.66 0.876846
Target:  5'- uUCCAauucCUCCGcugGugGAACAaCCGUUCg -3'
miRNA:   3'- -AGGU----GGGGCug-CugCUUGUaGGCAAG- -5'
22133 5' -54.3 NC_004927.1 + 14527 0.66 0.876093
Target:  5'- uUCCACCCCcuuucgggaagugGACGACGGc---CCGUa- -3'
miRNA:   3'- -AGGUGGGG-------------CUGCUGCUuguaGGCAag -5'
22133 5' -54.3 NC_004927.1 + 25952 0.66 0.86921
Target:  5'- -aCGCCCgGACaaccgcauCGAGCAUCCGg-- -3'
miRNA:   3'- agGUGGGgCUGcu------GCUUGUAGGCaag -5'
22133 5' -54.3 NC_004927.1 + 60352 0.66 0.86921
Target:  5'- gUCCacgGCCCCGACaACGAGC--CUGUUa -3'
miRNA:   3'- -AGG---UGGGGCUGcUGCUUGuaGGCAAg -5'
22133 5' -54.3 NC_004927.1 + 40166 0.67 0.836403
Target:  5'- aCUACCuCCGACGAgccgcguuCGAGCcgCUGUaUCa -3'
miRNA:   3'- aGGUGG-GGCUGCU--------GCUUGuaGGCA-AG- -5'
22133 5' -54.3 NC_004927.1 + 60146 0.67 0.826789
Target:  5'- gUCCucgaaagACCCCGA-GACGGAC-UCCGa-- -3'
miRNA:   3'- -AGG-------UGGGGCUgCUGCUUGuAGGCaag -5'
22133 5' -54.3 NC_004927.1 + 31915 0.67 0.826789
Target:  5'- aCCGCCCUGAgGgGCGAuucgggggcuguuACAUCCGc-- -3'
miRNA:   3'- aGGUGGGGCUgC-UGCU-------------UGUAGGCaag -5'
22133 5' -54.3 NC_004927.1 + 49819 0.67 0.82234
Target:  5'- cUCguCCCUGACGACGGugAaacuucgguagaccgUgCGUUCg -3'
miRNA:   3'- -AGguGGGGCUGCUGCUugU---------------AgGCAAG- -5'
22133 5' -54.3 NC_004927.1 + 10396 0.67 0.809634
Target:  5'- aCCAacUCCCGACGACGccccacgguggGGCGUuucgCCGUUUa -3'
miRNA:   3'- aGGU--GGGGCUGCUGC-----------UUGUA----GGCAAG- -5'
22133 5' -54.3 NC_004927.1 + 74442 0.67 0.800345
Target:  5'- cCCGCCUCGAUGAUGGugggcacgcuCAUUCGUg- -3'
miRNA:   3'- aGGUGGGGCUGCUGCUu---------GUAGGCAag -5'
22133 5' -54.3 NC_004927.1 + 28820 0.68 0.781276
Target:  5'- aUCCGCCUCGAUGcCGGGaa-CCGUUg -3'
miRNA:   3'- -AGGUGGGGCUGCuGCUUguaGGCAAg -5'
22133 5' -54.3 NC_004927.1 + 64994 0.68 0.771517
Target:  5'- --aACCCCGAggaggucguugaCGAUGAAgccaAUCCGUUCg -3'
miRNA:   3'- aggUGGGGCU------------GCUGCUUg---UAGGCAAG- -5'
22133 5' -54.3 NC_004927.1 + 69837 0.68 0.771517
Target:  5'- --aACCCUGAUGGUGGGCGUCCGa-- -3'
miRNA:   3'- aggUGGGGCUGCUGCUUGUAGGCaag -5'
22133 5' -54.3 NC_004927.1 + 63876 0.68 0.751599
Target:  5'- gCCGCCCCGguuACGACG-AC-UCCGc-- -3'
miRNA:   3'- aGGUGGGGC---UGCUGCuUGuAGGCaag -5'
22133 5' -54.3 NC_004927.1 + 62152 0.68 0.741462
Target:  5'- uUCCACCCgGAUG-UGAACGaaaUCCGg-- -3'
miRNA:   3'- -AGGUGGGgCUGCuGCUUGU---AGGCaag -5'
22133 5' -54.3 NC_004927.1 + 71182 0.69 0.678808
Target:  5'- cUCUACCaagagaCGGCGACGAACGUUCu--- -3'
miRNA:   3'- -AGGUGGg-----GCUGCUGCUUGUAGGcaag -5'
22133 5' -54.3 NC_004927.1 + 66980 0.7 0.656408
Target:  5'- -aCAUCCCGAUGGCGAccgggaugcgcucGCAggaCGUUCg -3'
miRNA:   3'- agGUGGGGCUGCUGCU-------------UGUag-GCAAG- -5'
22133 5' -54.3 NC_004927.1 + 23992 0.7 0.636057
Target:  5'- gCUugCCCucCGugGAGCGUCCGg-- -3'
miRNA:   3'- aGGugGGGcuGCugCUUGUAGGCaag -5'
22133 5' -54.3 NC_004927.1 + 72010 0.71 0.614623
Target:  5'- gCCGCCCUGugaGCGACGAGUA-CCGUUUc -3'
miRNA:   3'- aGGUGGGGC---UGCUGCUUGUaGGCAAG- -5'
22133 5' -54.3 NC_004927.1 + 73886 0.73 0.459836
Target:  5'- uUCgACCCCGACGAUGaAAUAUUCGa-- -3'
miRNA:   3'- -AGgUGGGGCUGCUGC-UUGUAGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.