miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22134 3' -56.6 NC_004927.1 + 43019 0.67 0.720754
Target:  5'- -aGGUCGAuAC-CUGUCAG-CUCaCGCu -3'
miRNA:   3'- agCCAGCUuUGcGGCAGUCgGAG-GCG- -5'
22134 3' -56.6 NC_004927.1 + 21237 0.67 0.700178
Target:  5'- uUCcGUCGAuuaccuccACGUCGUCAGCgUCCa- -3'
miRNA:   3'- -AGcCAGCUu-------UGCGGCAGUCGgAGGcg -5'
22134 3' -56.6 NC_004927.1 + 75241 0.68 0.637299
Target:  5'- cUCGGUCGggGaGCUgGUCgAGCCaaUCCGg -3'
miRNA:   3'- -AGCCAGCuuUgCGG-CAG-UCGG--AGGCg -5'
22134 3' -56.6 NC_004927.1 + 66918 0.68 0.637299
Target:  5'- -gGGUUGAGcugaugaccACGCCGUa--CCUCCGUg -3'
miRNA:   3'- agCCAGCUU---------UGCGGCAgucGGAGGCG- -5'
22134 3' -56.6 NC_004927.1 + 29211 0.68 0.616207
Target:  5'- uUCGGcuUCGuagaGCCaUCAGgCUCCGCg -3'
miRNA:   3'- -AGCC--AGCuuugCGGcAGUCgGAGGCG- -5'
22134 3' -56.6 NC_004927.1 + 34233 0.71 0.4928
Target:  5'- cUCGGggCGAAGCGCCcuUCGGCgUgCCGUc -3'
miRNA:   3'- -AGCCa-GCUUUGCGGc-AGUCGgA-GGCG- -5'
22134 3' -56.6 NC_004927.1 + 33417 0.71 0.463611
Target:  5'- aUCGaGUCGGAaguaaACGUCGUUGGCCgcuUUCGCa -3'
miRNA:   3'- -AGC-CAGCUU-----UGCGGCAGUCGG---AGGCG- -5'
22134 3' -56.6 NC_004927.1 + 7168 0.71 0.454083
Target:  5'- uUCGGUCGGGcuaucACGUCGUgGGUCUUgGUa -3'
miRNA:   3'- -AGCCAGCUU-----UGCGGCAgUCGGAGgCG- -5'
22134 3' -56.6 NC_004927.1 + 4736 0.72 0.417076
Target:  5'- cUCGGUCGAuuGCGuuGaaCGGCCUuCCGUc -3'
miRNA:   3'- -AGCCAGCUu-UGCggCa-GUCGGA-GGCG- -5'
22134 3' -56.6 NC_004927.1 + 21338 0.76 0.237533
Target:  5'- uUCGGUCGGAGCGCCGUU-GUCgUCgGUg -3'
miRNA:   3'- -AGCCAGCUUUGCGGCAGuCGG-AGgCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.