miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22136 3' -47.4 NC_004927.1 + 45451 0.66 0.992627
Target:  5'- aGGUGAGCgagaaggCGGCG-GUUCAGCU-CGGu -3'
miRNA:   3'- -CUAUUCGa------GUCGUuCGAGUUGAaGCU- -5'
22136 3' -47.4 NC_004927.1 + 59206 0.66 0.991415
Target:  5'- --aAGGgUCAGCuugAGGCUCuugaggacGACUUCGAc -3'
miRNA:   3'- cuaUUCgAGUCG---UUCGAG--------UUGAAGCU- -5'
22136 3' -47.4 NC_004927.1 + 72060 0.66 0.990051
Target:  5'- --gGAGaCUCAGCGAGC-CAgcgacccuaacgGCUUCGc -3'
miRNA:   3'- cuaUUC-GAGUCGUUCGaGU------------UGAAGCu -5'
22136 3' -47.4 NC_004927.1 + 9959 0.67 0.984113
Target:  5'- ----cGCUCGGgAAGCUCGucgaggauuucuuCUUCGAg -3'
miRNA:   3'- cuauuCGAGUCgUUCGAGUu------------GAAGCU- -5'
22136 3' -47.4 NC_004927.1 + 47327 0.67 0.982832
Target:  5'- ---cGGCUCAGCAGGCcgcucUCAuCUUCc- -3'
miRNA:   3'- cuauUCGAGUCGUUCG-----AGUuGAAGcu -5'
22136 3' -47.4 NC_004927.1 + 1560 0.68 0.972228
Target:  5'- -cUAAGgaCAGCcGGUUCGacaGCUUCGAg -3'
miRNA:   3'- cuAUUCgaGUCGuUCGAGU---UGAAGCU- -5'
22136 3' -47.4 NC_004927.1 + 28691 0.68 0.965439
Target:  5'- --gAGGUUCAGCGccucGGCUucuaugucaacCGGCUUCGAg -3'
miRNA:   3'- cuaUUCGAGUCGU----UCGA-----------GUUGAAGCU- -5'
22136 3' -47.4 NC_004927.1 + 32576 0.71 0.914236
Target:  5'- ----cGCUCGGguGGCUCAccGCaUCGAg -3'
miRNA:   3'- cuauuCGAGUCguUCGAGU--UGaAGCU- -5'
22136 3' -47.4 NC_004927.1 + 69999 0.72 0.860591
Target:  5'- uGAUAAGCUCAuCAAGCUCuaccaauccGGCUUCc- -3'
miRNA:   3'- -CUAUUCGAGUcGUUCGAG---------UUGAAGcu -5'
22136 3' -47.4 NC_004927.1 + 46694 0.75 0.695963
Target:  5'- cGGUGAGCcgGGCcuGUUCAACUUCGAg -3'
miRNA:   3'- -CUAUUCGagUCGuuCGAGUUGAAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.