miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22136 5' -54 NC_004927.1 + 21118 0.66 0.872387
Target:  5'- --aGGGAGAUGCgcuccucgaagUCGCCGcucgCGCCg -3'
miRNA:   3'- ucgCCUUCUACG-----------AGUGGCucaaGCGG- -5'
22136 5' -54 NC_004927.1 + 2106 0.66 0.864523
Target:  5'- uAGCGccGAuGGUGUUCACCGuauucucaacgaAG-UCGCCg -3'
miRNA:   3'- -UCGC--CUuCUACGAGUGGC------------UCaAGCGG- -5'
22136 5' -54 NC_004927.1 + 16939 0.66 0.857245
Target:  5'- cGGCGGcuGAUGCUCuacaAUCGGGgaacguggcacgacCGCCg -3'
miRNA:   3'- -UCGCCuuCUACGAG----UGGCUCaa------------GCGG- -5'
22136 5' -54 NC_004927.1 + 59872 0.66 0.856425
Target:  5'- aAGCuGGAGAUGgaUACCGAGgaaGCg -3'
miRNA:   3'- -UCGcCUUCUACgaGUGGCUCaagCGg -5'
22136 5' -54 NC_004927.1 + 13461 0.66 0.854778
Target:  5'- uGUGGGAGGUGUggguuguaucgaCGCCGAGcUUGUCc -3'
miRNA:   3'- uCGCCUUCUACGa-----------GUGGCUCaAGCGG- -5'
22136 5' -54 NC_004927.1 + 57136 0.66 0.851456
Target:  5'- uGCGGAacacgacggcguuguGGAuaUGUUCAcuCCGAuUUCGCCu -3'
miRNA:   3'- uCGCCU---------------UCU--ACGAGU--GGCUcAAGCGG- -5'
22136 5' -54 NC_004927.1 + 7765 0.67 0.812679
Target:  5'- -aCGGAAGuUGCUaCACCGGa--CGCCg -3'
miRNA:   3'- ucGCCUUCuACGA-GUGGCUcaaGCGG- -5'
22136 5' -54 NC_004927.1 + 13404 0.67 0.812679
Target:  5'- cGGCGGAAca-----GCCGAGUUCGUCu -3'
miRNA:   3'- -UCGCCUUcuacgagUGGCUCAAGCGG- -5'
22136 5' -54 NC_004927.1 + 41344 0.67 0.803341
Target:  5'- aGGCcG-AGGUGCgcCACCGAGUUCGa- -3'
miRNA:   3'- -UCGcCuUCUACGa-GUGGCUCAAGCgg -5'
22136 5' -54 NC_004927.1 + 73916 0.67 0.793829
Target:  5'- cGGUGGggGAgaagcgGCgaugaGCCGAGcUUCGaCCc -3'
miRNA:   3'- -UCGCCuuCUa-----CGag---UGGCUC-AAGC-GG- -5'
22136 5' -54 NC_004927.1 + 25024 0.68 0.764352
Target:  5'- uAGCGGGAGAUuagGUcuUCaACCGAGagCGCg -3'
miRNA:   3'- -UCGCCUUCUA---CG--AG-UGGCUCaaGCGg -5'
22136 5' -54 NC_004927.1 + 21457 0.71 0.60502
Target:  5'- cAGuuGccGAgGCUCACCGGGUcgUCGCCc -3'
miRNA:   3'- -UCgcCuuCUaCGAGUGGCUCA--AGCGG- -5'
22136 5' -54 NC_004927.1 + 16324 0.72 0.540835
Target:  5'- gAGCGGAugauugGGAUGCUCcgauGCCGG--UCGUCg -3'
miRNA:   3'- -UCGCCU------UCUACGAG----UGGCUcaAGCGG- -5'
22136 5' -54 NC_004927.1 + 68399 0.76 0.342383
Target:  5'- cGCGGAAGcgugaGCUUcuuGCUGAGUUCGCUg -3'
miRNA:   3'- uCGCCUUCua---CGAG---UGGCUCAAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.