miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22138 3' -56.2 NC_004927.1 + 10405 0.66 0.802064
Target:  5'- gCCGGGAUgaccaacucCCGAcGAcgcCCCACGGuggGGCGu -3'
miRNA:   3'- -GGCCCUGa--------GGCUuCU---GGGUGCU---UCGU- -5'
22138 3' -56.2 NC_004927.1 + 34918 0.66 0.754117
Target:  5'- gUGGGuCUUCGGAGuCCCgGCGAGcGCGu -3'
miRNA:   3'- gGCCCuGAGGCUUCuGGG-UGCUU-CGU- -5'
22138 3' -56.2 NC_004927.1 + 38725 0.66 0.754117
Target:  5'- aCGGGAa-CCGAGucGGCCCGCGccGUg -3'
miRNA:   3'- gGCCCUgaGGCUU--CUGGGUGCuuCGu -5'
22138 3' -56.2 NC_004927.1 + 54769 0.67 0.713632
Target:  5'- gUCGGuGACUCCacGAGuGACCC-CGgcGCGg -3'
miRNA:   3'- -GGCC-CUGAGG--CUU-CUGGGuGCuuCGU- -5'
22138 3' -56.2 NC_004927.1 + 23141 0.67 0.7033
Target:  5'- gCCGGGcCUCCguGAAGugCUgAgGGAGCGg -3'
miRNA:   3'- -GGCCCuGAGG--CUUCugGG-UgCUUCGU- -5'
22138 3' -56.2 NC_004927.1 + 68993 0.68 0.661429
Target:  5'- aCGGGcGCUCCGA---CCCACGAcgaaguggugaAGCGc -3'
miRNA:   3'- gGCCC-UGAGGCUucuGGGUGCU-----------UCGU- -5'
22138 3' -56.2 NC_004927.1 + 72388 0.69 0.598041
Target:  5'- aCCcGGACUCCgcucgugguGAAGACCCucCGAAGaCGg -3'
miRNA:   3'- -GGcCCUGAGG---------CUUCUGGGu-GCUUC-GU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.