miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22141 5' -54.9 NC_004927.1 + 21747 0.66 0.774148
Target:  5'- -cGUCgccgcCCGAGUUGGcgauAGUgauACCGGCGAa -3'
miRNA:   3'- caUAGa----GGCUCAGCC----UCA---UGGCCGUU- -5'
22141 5' -54.9 NC_004927.1 + 23236 0.69 0.64761
Target:  5'- -cGUCUCCGcucGGUCGGGGagaGCgGGCGu -3'
miRNA:   3'- caUAGAGGC---UCAGCCUCa--UGgCCGUu -5'
22141 5' -54.9 NC_004927.1 + 36414 0.66 0.812675
Target:  5'- -cGUCUCuauCGGGUCaGAGUguuGCCGGUAc -3'
miRNA:   3'- caUAGAG---GCUCAGcCUCA---UGGCCGUu -5'
22141 5' -54.9 NC_004927.1 + 42618 0.8 0.149188
Target:  5'- cGUGUCUCCGGGUCGaaguAGUGCUGGUAGa -3'
miRNA:   3'- -CAUAGAGGCUCAGCc---UCAUGGCCGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.