miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22143 5' -51.6 NC_004927.1 + 11582 0.66 0.943134
Target:  5'- gAGCCuUCGAGUcCAAUccGCUCGGC-CCa -3'
miRNA:   3'- -UUGG-GGCUUAuGUUGa-UGAGCCGaGG- -5'
22143 5' -51.6 NC_004927.1 + 38746 0.66 0.942641
Target:  5'- gAACUCCGAGUGCGcccauccacgggaACcgAgUCGGC-CCg -3'
miRNA:   3'- -UUGGGGCUUAUGU-------------UGa-UgAGCCGaGG- -5'
22143 5' -51.6 NC_004927.1 + 58567 0.66 0.932748
Target:  5'- cGGCCCUGAuUGCGuucGCUGUUCaGGCgUCCg -3'
miRNA:   3'- -UUGGGGCUuAUGU---UGAUGAG-CCG-AGG- -5'
22143 5' -51.6 NC_004927.1 + 17956 0.66 0.927135
Target:  5'- cGACCCCGAccuaAUGCcguccacggaaGACcgGCgagaaGGCUCCg -3'
miRNA:   3'- -UUGGGGCU----UAUG-----------UUGa-UGag---CCGAGG- -5'
22143 5' -51.6 NC_004927.1 + 60417 0.67 0.897717
Target:  5'- aGGCgaCCGGAUAuucggucacguccauCAGCUACUCcGGCUCg -3'
miRNA:   3'- -UUGg-GGCUUAU---------------GUUGAUGAG-CCGAGg -5'
22143 5' -51.6 NC_004927.1 + 63874 0.68 0.880074
Target:  5'- cGCCCCGGuUACGACgACUCcGCUg- -3'
miRNA:   3'- uUGGGGCUuAUGUUGaUGAGcCGAgg -5'
22143 5' -51.6 NC_004927.1 + 62148 0.68 0.872279
Target:  5'- --aCCCGGAUGugaacgaaaucCGGCUACUCaGCUCg -3'
miRNA:   3'- uugGGGCUUAU-----------GUUGAUGAGcCGAGg -5'
22143 5' -51.6 NC_004927.1 + 17392 0.68 0.855936
Target:  5'- gAACCgaCCGAGUGaauCGACUACUCcGGCUa- -3'
miRNA:   3'- -UUGG--GGCUUAU---GUUGAUGAG-CCGAgg -5'
22143 5' -51.6 NC_004927.1 + 67202 0.68 0.838643
Target:  5'- -uUCCCGAccACGGCaACUaCGGCUUCg -3'
miRNA:   3'- uuGGGGCUuaUGUUGaUGA-GCCGAGG- -5'
22143 5' -51.6 NC_004927.1 + 20043 0.72 0.675713
Target:  5'- cACCCCGGu--CGAUgaguCUCGGCUCa -3'
miRNA:   3'- uUGGGGCUuauGUUGau--GAGCCGAGg -5'
22143 5' -51.6 NC_004927.1 + 12122 0.75 0.51048
Target:  5'- cGCCCCGucGAUgauguaauaugaaGCGGCUucACUCGGUUCCg -3'
miRNA:   3'- uUGGGGC--UUA-------------UGUUGA--UGAGCCGAGG- -5'
22143 5' -51.6 NC_004927.1 + 60137 0.75 0.457024
Target:  5'- aGACCCCGAG-ACgGACUccgagaguucguaaACUCGGCUCUc -3'
miRNA:   3'- -UUGGGGCUUaUG-UUGA--------------UGAGCCGAGG- -5'
22143 5' -51.6 NC_004927.1 + 62805 0.81 0.2267
Target:  5'- aGACCCCGAGUACGAUgGCUC-GCUCUu -3'
miRNA:   3'- -UUGGGGCUUAUGUUGaUGAGcCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.