Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22143 | 5' | -51.6 | NC_004927.1 | + | 11582 | 0.66 | 0.943134 |
Target: 5'- gAGCCuUCGAGUcCAAUccGCUCGGC-CCa -3' miRNA: 3'- -UUGG-GGCUUAuGUUGa-UGAGCCGaGG- -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 38746 | 0.66 | 0.942641 |
Target: 5'- gAACUCCGAGUGCGcccauccacgggaACcgAgUCGGC-CCg -3' miRNA: 3'- -UUGGGGCUUAUGU-------------UGa-UgAGCCGaGG- -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 58567 | 0.66 | 0.932748 |
Target: 5'- cGGCCCUGAuUGCGuucGCUGUUCaGGCgUCCg -3' miRNA: 3'- -UUGGGGCUuAUGU---UGAUGAG-CCG-AGG- -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 17956 | 0.66 | 0.927135 |
Target: 5'- cGACCCCGAccuaAUGCcguccacggaaGACcgGCgagaaGGCUCCg -3' miRNA: 3'- -UUGGGGCU----UAUG-----------UUGa-UGag---CCGAGG- -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 60417 | 0.67 | 0.897717 |
Target: 5'- aGGCgaCCGGAUAuucggucacguccauCAGCUACUCcGGCUCg -3' miRNA: 3'- -UUGg-GGCUUAU---------------GUUGAUGAG-CCGAGg -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 63874 | 0.68 | 0.880074 |
Target: 5'- cGCCCCGGuUACGACgACUCcGCUg- -3' miRNA: 3'- uUGGGGCUuAUGUUGaUGAGcCGAgg -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 62148 | 0.68 | 0.872279 |
Target: 5'- --aCCCGGAUGugaacgaaaucCGGCUACUCaGCUCg -3' miRNA: 3'- uugGGGCUUAU-----------GUUGAUGAGcCGAGg -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 17392 | 0.68 | 0.855936 |
Target: 5'- gAACCgaCCGAGUGaauCGACUACUCcGGCUa- -3' miRNA: 3'- -UUGG--GGCUUAU---GUUGAUGAG-CCGAgg -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 67202 | 0.68 | 0.838643 |
Target: 5'- -uUCCCGAccACGGCaACUaCGGCUUCg -3' miRNA: 3'- uuGGGGCUuaUGUUGaUGA-GCCGAGG- -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 20043 | 0.72 | 0.675713 |
Target: 5'- cACCCCGGu--CGAUgaguCUCGGCUCa -3' miRNA: 3'- uUGGGGCUuauGUUGau--GAGCCGAGg -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 12122 | 0.75 | 0.51048 |
Target: 5'- cGCCCCGucGAUgauguaauaugaaGCGGCUucACUCGGUUCCg -3' miRNA: 3'- uUGGGGC--UUA-------------UGUUGA--UGAGCCGAGG- -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 60137 | 0.75 | 0.457024 |
Target: 5'- aGACCCCGAG-ACgGACUccgagaguucguaaACUCGGCUCUc -3' miRNA: 3'- -UUGGGGCUUaUG-UUGA--------------UGAGCCGAGG- -5' |
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22143 | 5' | -51.6 | NC_004927.1 | + | 62805 | 0.81 | 0.2267 |
Target: 5'- aGACCCCGAGUACGAUgGCUC-GCUCUu -3' miRNA: 3'- -UUGGGGCUUAUGUUGaUGAGcCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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